-Genomic Data Links
Protein
Irf6
UniPROBE Accession Number
UP00011
Species
Mus musculus
Domain
IRF
Name and Synonyms
interferon regulatory factor 6
AI876454, E230028I05Rik, mirf6
Description
None Available
-PBM Motif Data for Irf6
Primary Motif (Seed-And-Wobble)
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Primary PWM
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Top Kmer
A.CGAAACC E.S. 0.494
GGTTTCG.T E.S. 0.494
Secondary Motif (Seed-And-Wobble)
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Secondary PWM
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Top Kmer
A.TCTCGGT E.S. 0.465
ACCGAGA.T E.S. 0.465
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH3803)
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PWM
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Consensus
NNNHGAWASB
VSTWTCDNNN
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH3803)
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PWM
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Consensus
NNHGADACNN
NNGTHTCDNN
Downloads
Download the zip of all Irf6 PBM files or view the downloads directory for individual files.
Link to TFBSshape
This link will take you to the corresponding entry for Irf6 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=11&sourceDB=uniprobe

-Irf6 Datasets
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3803 #1 AMADID #016060 E. coli DNA binding domain only 2016-03-24 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3803 #1 AMADID #015681 E. coli DNA binding domain only 2016-03-24 save search
Clone pTH3803 insert sequence
1    ALHPRRVRLK PWLVAQVDSG LYPGLIWLHR DSKRFQIPWK HATRHSPQQE
51   EENTIFKAWA VETGKYQEGV DDPDPAKWKA QLRCALNKSR EFNLMYDGTK
101  EVPMNPVKIY QVCDIPQTQG SVINPGSTGS AP

DNA Binding Domains (Pfam) for clone 3803
Region 6..117
1    RVRLKPWLVA QVDSGLYPGL IWLHRDSKRF QIPWKHATRH SPQQEEENTI
51   FKAWAVETGK YQEGVDDPDP AKWKAQLRCA LNKSREFNLM YDGTKEVPMN
101  PVKIYQVCDI PQ
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


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