|
|
| -Genomic Data |
Links |
- Protein
- Gabpa
|
- UniPROBE Accession Number
- UP00013
|
- Species
- Mus musculus
|
- Domain
- ETS
|
- Uniprot
-
Q00422
|
- Name and Synonyms
-
GA repeat binding protein, alpha
E4tf1a, GA-binding protein alpha chain, GABP-alpha subunit
|
- IHOP
-
121149
|
- RefSeq
-
NP_032091
|
- Description
- Mus musculus GA repeat binding protein, alpha
|
- JASPAR
-
MA0062
|
| -PBM Motif Data for Gabpa |
- Primary Motif (Seed-And-Wobble)
-
|
- Primary PWM
-
View
Save
|
- Top Kmer
-
ACCGGAAG E.S. 0.498
CTTCCGGT E.S. 0.498
|
- Secondary Motif (Seed-And-Wobble)
-
|
- Secondary PWM
-
View
Save
|
- Top Kmer
-
CTTCC.CC.C E.S. 0.446
G.GG.GGAAG E.S. 0.446
|
-
Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH2829)
-
|
- PWM
-
View
|
- Consensus
-
RYTTCCGBYN
NRVCGGAARY
|
-
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2829)
-
|
- PWM
-
View
|
- Consensus
-
RYTTCCGGYN
NRCCGGAARY
|
- Downloads
-
Download the
zip
of all Gabpa PBM files
or view the
downloads directory
for individual files.
|
- Link to TFBSshape
-
This link will take you to the corresponding entry for Gabpa
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=13&sourceDB=uniprobe
|
| -Gabpa Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
|
pTH2829 |
#1 |
AMADID #016060 |
E. coli |
DNA binding domain only |
2016-03-24 |
|
|
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
|
pTH2829 |
#1 |
AMADID #015681 |
E. coli |
DNA binding domain only |
2016-03-24 |
|
|
- Clone pTH2829 insert sequence
- 1 GEDRSSPGNR TGNNGQIQLW QFLLELLTDK DARDCISWVG DEGEFKLNQP
51 ELVAQKWGQR KNKPTMNYEK LSRALRYYYD GDMICKVQGK RFVYKFVCDL
101 KTLIGYSAAE LNRLVI
- DNA Binding Domains (Pfam) for clone 2829
-
Region 16..99
1 QIQLWQFLLE LLTDKDARDC ISWVGDEGEF KLNQPELVAQ KWGQRKNKPT
51 MNYEKLSRAL RYYYDGDMIC KVQGKRFVYK FVCD
-
|
- References
-
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
|
|