-Genomic Data Links
Protein
Gabpa
UniPROBE Accession Number
UP00013
Species
Mus musculus
Domain
ETS
Name and Synonyms
GA repeat binding protein, alpha
E4tf1a, GA-binding protein alpha chain, GABP-alpha subunit
Description
Mus musculus GA repeat binding protein, alpha
-PBM Motif Data for Gabpa
Primary Motif (Seed-And-Wobble)
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Primary PWM
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Top Kmer
ACCGGAAG E.S. 0.498
CTTCCGGT E.S. 0.498
Secondary Motif (Seed-And-Wobble)
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Secondary PWM
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Top Kmer
CTTCC.CC.C E.S. 0.446
G.GG.GGAAG E.S. 0.446
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH2829)
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PWM
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Consensus
RYTTCCGBYN
NRVCGGAARY
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2829)
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PWM
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Consensus
RYTTCCGGYN
NRCCGGAARY
Downloads
Download the zip of all Gabpa PBM files or view the downloads directory for individual files.
Link to TFBSshape
This link will take you to the corresponding entry for Gabpa in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=13&sourceDB=uniprobe

-Gabpa Datasets
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH2829 #1 AMADID #016060 E. coli DNA binding domain only 2016-03-24 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH2829 #1 AMADID #015681 E. coli DNA binding domain only 2016-03-24 save search
Clone pTH2829 insert sequence
1    GEDRSSPGNR TGNNGQIQLW QFLLELLTDK DARDCISWVG DEGEFKLNQP
51   ELVAQKWGQR KNKPTMNYEK LSRALRYYYD GDMICKVQGK RFVYKFVCDL
101  KTLIGYSAAE LNRLVI

DNA Binding Domains (Pfam) for clone 2829
Region 16..99
1   QIQLWQFLLE LLTDKDARDC ISWVGDEGEF KLNQPELVAQ KWGQRKNKPT
51  MNYEKLSRAL RYYYDGDMIC KVQGKRFVYK FVCD
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


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