-Genomic Data Links
Protein
Sry
UniPROBE Accession Number
UP00016
Species
Mus musculus
Domain
HMG_box
Name and Synonyms
sex determining region of Chr Y
MGC129295, Sex-determining region Y protein, Tdf, Tdy, Testis-determining factor
Description
None Available
-PBM Motif Data for Sry
Primary Motif (Seed-And-Wobble)
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Primary PWM
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Top Kmer
ATTATAAT E.S. 0.482
ATTATAAT E.S. 0.482
Secondary Motif (Seed-And-Wobble)
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Secondary PWM
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Top Kmer
A..GAACAAT E.S. 0.480
ATTGTTC..T E.S. 0.480
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH2833)
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PWM
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Consensus
NNNNNSATTS
SAATSNNNNN
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2833)
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PWM
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Consensus
NNNNNWBARN
NYTVWNNNNN
Downloads
Download the zip of all Sry PBM files or view the downloads directory for individual files.
Link to TFBSshape
This link will take you to the corresponding entry for Sry in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=16&sourceDB=uniprobe

-Sry Datasets
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH2833 #1 AMADID #016060 IVT DNA binding domain only 2016-03-24 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH2833 #1 AMADID #015681 IVT DNA binding domain only 2016-03-24 save search
Clone pTH2833 insert sequence
1   EGHVKRPMNA FMVWSRGERH KLAQQNPSMQ NTEISKQLGC RWKSLTEAEK
51  RPFFQEAQRL KILHREKYPN YKYQPHRRAK VSQRSGIL

DNA Binding Domains (Pfam) for clone 2833
Region 4..72
1   VKRPMNAFMV WSRGERHKLA QQNPSMQNTE ISKQLGCRWK SLTEAEKRPF
51  FQEAQRLKIL HREKYPNYK
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


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