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| -Genomic Data |
Links |
- Protein
- Sry
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- UniPROBE Accession Number
- UP00016
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- Species
- Mus musculus
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- Domain
- HMG_box
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- Uniprot
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Q05738
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- Name and Synonyms
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sex determining region of Chr Y
MGC129295, Sex-determining region Y protein, Tdf, Tdy, Testis-determining factor
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- IHOP
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125474
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- RefSeq
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NP_035694
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- Description
- None Available
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- JASPAR
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MA0084
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| -PBM Motif Data for Sry |
- Primary Motif (Seed-And-Wobble)
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- Primary PWM
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View
Save
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- Top Kmer
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ATTATAAT E.S. 0.482
ATTATAAT E.S. 0.482
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- Secondary Motif (Seed-And-Wobble)
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- Secondary PWM
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View
Save
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- Top Kmer
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A..GAACAAT E.S. 0.480
ATTGTTC..T E.S. 0.480
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Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH2833)
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- PWM
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View
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- Consensus
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NNNNNSATTS
SAATSNNNNN
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Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2833)
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- PWM
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View
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- Consensus
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NNNNNWBARN
NYTVWNNNNN
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- Downloads
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Download the
zip
of all Sry PBM files
or view the
downloads directory
for individual files.
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- Link to TFBSshape
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This link will take you to the corresponding entry for Sry
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=16&sourceDB=uniprobe
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| -Sry Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2833 |
#1 |
AMADID #016060 |
IVT |
DNA binding domain only |
2016-03-24 |
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| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2833 |
#1 |
AMADID #015681 |
IVT |
DNA binding domain only |
2016-03-24 |
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- Clone pTH2833 insert sequence
- 1 EGHVKRPMNA FMVWSRGERH KLAQQNPSMQ NTEISKQLGC RWKSLTEAEK
51 RPFFQEAQRL KILHREKYPN YKYQPHRRAK VSQRSGIL
- DNA Binding Domains (Pfam) for clone 2833
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Region 4..72
1 VKRPMNAFMV WSRGERHKLA QQNPSMQNTE ISKQLGCRWK SLTEAEKRPF
51 FQEAQRLKIL HREKYPNYK
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- References
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Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
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