-Genomic Data Links
Protein
Nkx3-1
UniPROBE Accession Number
UP00017
Species
Mus musculus
Domain
Homeobox
Name and Synonyms
NK-3 transcription factor, locus 1 (Drosophila)
bagpipe, Bax, Homeobox protein Nkx-3.1, NKX3.1, Nkx-3.1, Nkx3a, NKX3A
Description
Mus musculus homeobox-containing protein Nkx-3.1 mRNA
-PBM Motif Data for Nkx3-1
Primary Motif (Seed-And-Wobble)
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Primary PWM
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Top Kmer
CCACTTAA E.S. 0.498
TTAAGTGG E.S. 0.498
Secondary Motif (Seed-And-Wobble)
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Secondary PWM
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Top Kmer
AAGTACTT E.S. 0.496
AAGTACTT E.S. 0.496
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH2923)
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PWM
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Consensus
NNVYACTTNN
NNAAGTRBNN
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2923)
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PWM
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Consensus
NNVYACTTHN
NDAAGTRBNN
Downloads
Download the zip of all Nkx3-1 PBM files or view the downloads directory for individual files.
Link to TFBSshape
This link will take you to the corresponding entry for Nkx3-1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=17&sourceDB=uniprobe

-Nkx3-1 Datasets
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH2923 #1 AMADID #016060 E. coli DNA binding domain only 2016-03-24 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH2923 #1 AMADID #015681 E. coli DNA binding domain only 2016-03-24 save search
Clone pTH2923 insert sequence
1   NPGDLASAPQ VTKQPQKRSR AAFSHTQVIE LERKFSHQKY LSAPERAHLA
51  KNLKLTETQV KIWFQNRRYK TKRKQLSEDL GVLEKNSPLS LPA

DNA Binding Domains (Pfam) for clone 2923
Region 17..73
1   KRSRAAFSHT QVIELERKFS HQKYLSAPER AHLAKNLKLT ETQVKIWFQN
51  RRYKTKR
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


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