-Genomic Data Links
Protein
Sp4
UniPROBE Accession Number
UP00002
Species
Mus musculus
Domain
zf-C2H2
Name and Synonyms
trans-acting transcription factor 4
5730497N03Rik, HF1-b, HF-1b, Transcription factor Sp4
Description
Mus musculus similar to trans-acting transcription factor 4 (LOC211769), mRNA
-PBM Motif Data for Sp4
Primary Motif (Seed-And-Wobble)
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Primary PWM
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Top Kmer
CCGCCCCC E.S. 0.498
GGGGGCGG E.S. 0.498
Secondary Motif (Seed-And-Wobble)
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Secondary PWM
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Top Kmer
AGGCGTG.C E.S. 0.488
G.CACGCCT E.S. 0.488
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH1011)
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PWM
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Consensus
NMCGCCCMYN
NRKGGGCGKN
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH1011)
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PWM
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Consensus
NHCCWCGHMH
DKDCGWGGDN
Downloads
Download the zip of all Sp4 PBM files or view the downloads directory for individual files.
Link to TFBSshape
This link will take you to the corresponding entry for Sp4 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=2&sourceDB=uniprobe

-Sp4 Datasets
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH1011 #1 AMADID #016060 E. coli DNA binding domain only 2016-03-24 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH1011 #1 AMADID #015681 E. coli DNA binding domain only 2016-03-24 save search
Clone pTH1011 insert sequence
1    EGEGRGSSEP GKKKQHVCHI EGCGKVYGKT SHLRAHLRWH TGERPFICNW
51   MFCGKRFTRS DELQRHRRTH TGEKRFECPE CSKRFMRSDH LSKHVKTHQN
101  KKGGGTALAI VTS

DNA Binding Domains (Pfam) for clone 1011
Region 16..40
1   HVCHIEGCGK VYGKTSHLRA HLRWH

Region 46..70
1   FICNWMFCGK RFTRSDELQR HRRTH

Region 76..98
1   FECPECSKRF MRSDHLSKHV KTH
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


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