-Genomic Data Links
Protein
Atf1
UniPROBE Accession Number
UP00020
Species
Mus musculus
Domain
BRLZ, BZIP_1, BZIP_2
Name and Synonyms
activating transcription factor 1
Activating transcription factor 1, Cyclic AMP-dependent transcription factor ATF-1, TCR-ATF1
Description
Mus musculus activating transcription factor 1 (Atf1), mRNA
-PBM Motif Data for Atf1
Primary Motif (Seed-And-Wobble)
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Primary PWM
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Top Kmer
TGACGTCA E.S. 0.497
TGACGTCA E.S. 0.497
Secondary Motif (Seed-And-Wobble)
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Secondary PWM
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Top Kmer
ATGACG..TA E.S. 0.424
TA..CGTCAT E.S. 0.424
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH3026)
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PWM
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Consensus
VTKAYGHNNN
NNNDCRTMAB
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH3026)
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PWM
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Consensus
NRNHBNNNNN
NNNNNVDNYN
Downloads
Download the zip of all Atf1 PBM files or view the downloads directory for individual files.
Link to TFBSshape
This link will take you to the corresponding entry for Atf1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=20&sourceDB=uniprobe

-Atf1 Datasets
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3026 #1 AMADID #016060 E. coli DNA binding domain only 2016-03-24 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3026 #1 AMADID #015681 E. coli DNA binding domain only 2016-03-24 save search
Clone pTH3026 insert sequence
1   MTSPVTLTSQ TTKTDDPQLR REIRLMKNRE AARECRRKKK EYVKCLENRV
51  AVLENQNKTL IEELKTLKDL YSHKSV

DNA Binding Domains (Pfam) for clone 3026
Region 16..75
1   DPQLRREIRL MKNREAAREC RRKKKEYVKC LENRVAVLEN QNKTLIEELK
51  TLKDLYSHKS
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


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