-Genomic Data Links
Protein
Sox30
UniPROBE Accession Number
UP00023
Species
Mus musculus
Domain
HMG_box
Name and Synonyms
SRY-box containing gene 30
Transcription factor SOX-30
Description
Mus musculus SRY-box containing gene 30 (Sox30)
-PBM Motif Data for Sox30
Primary Motif (Seed-And-Wobble)
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Primary PWM
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Top Kmer
A.AACAAT.G E.S. 0.485
C.ATTGTT.T E.S. 0.485
Secondary Motif (Seed-And-Wobble)
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Secondary PWM
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Top Kmer
ATTATAAT E.S. 0.462
ATTATAAT E.S. 0.462
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH2781)
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PWM
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Consensus
NNNNVAYAAT
ATTRTBNNNN
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2781)
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PWM
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Consensus
NNNNNAYAAT
ATTRTNNNNN
Downloads
Download the zip of all Sox30 PBM files or view the downloads directory for individual files.
Link to TFBSshape
This link will take you to the corresponding entry for Sox30 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=23&sourceDB=uniprobe

-Sox30 Datasets
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH2781 #1 AMADID #016060 E. coli DNA binding domain only 2016-03-24 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH2781 #1 AMADID #015681 E. coli DNA binding domain only 2016-03-24 save search
Clone pTH2781 insert sequence
1    DAGIPDTPFS KDRNGHVKRP MNAFMVWARI HRPALAKANP AANNAEISVQ
51   LGLEWNKLSE EQKKPYYDEA QKIKEKHREE FPGWVYQPRP GKRKRFPLSV
101  S

DNA Binding Domains (Pfam) for clone 2781
Region 17..85
1   VKRPMNAFMV WARIHRPALA KANPAANNAE ISVQLGLEWN KLSEEQKKPY
51  YDEAQKIKEK HREEFPGWV
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


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