-Genomic Data Links
Protein
Zscan4
UniPROBE Accession Number
UP00026
Species
Mus musculus
Domain
zf-C2H2
Name and Synonyms
zinc finger and SCAN domain containing 4
None Available
Description
Mus musculus BAC clone RP23-35L23 from chromosome 7, complete sequence.
-PBM Motif Data for Zscan4
Primary Motif (Seed-And-Wobble)
Image Not Available.  We apologize for the inconvenience.
Primary PWM
View       Save
Top Kmer
TGTGCACA E.S. 0.499
TGTGCACA E.S. 0.499
Secondary Motif (Seed-And-Wobble)
Image Not Available.  We apologize for the inconvenience.
Secondary PWM
View       Save
Top Kmer
GCACACAA E.S. 0.487
TTGTGTGC E.S. 0.487
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH2667)
Image Not Available.  We apologize for the inconvenience.
PWM
View
Consensus
NNNNWHNNNN
NNNNDWNNNN
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2667)
Image Not Available.  We apologize for the inconvenience.
PWM
View
Consensus
NNGCACANNN
NNNTGTGCNN
Downloads
Download the zip of all Zscan4 PBM files or view the downloads directory for individual files.
Link to TFBSshape
This link will take you to the corresponding entry for Zscan4 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=26&sourceDB=uniprobe

-Zscan4 Datasets
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH2667 #1 AMADID #016060 E. coli DNA binding domain only 2016-03-24 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH2667 #1 AMADID #015681 E. coli DNA binding domain only 2016-03-24 save search
Clone pTH2667 insert sequence
1    TFEGYQERLQ RDPKPYKCEE CPRTFKYPCN LSIHQKTHRK ERPFFCKECQ
51   IGFYQKSELH DHEVIHKAEK PFACSTCGRA FRYKTNLQAH ERIHTGEKPY
101  SCSLCNSSFR QSSTFHRHLR KFHKSE

DNA Binding Domains (Pfam) for clone 2667
Region 16..38
1   YKCEECPRTF KYPCNLSIHQ KTH

Region 44..66
1   FFCKECQIGF YQKSELHDHE VIH

Region 72..94
1   FACSTCGRAF RYKTNLQAHE RIH

Region 100..123
1   YSCSLCNSSF RQSSTFHRHL RKFH
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


Supported Browsers:IE 7.0.6001.18000, Firefox 3.5.11, Google Chrome 5.0.375.125 beta