Protein Details

-Genomic Data				Links
Protein Zscan4	UniPROBE Accession Number UP00026	Species Mus musculus	Domain zf-C2H2	Uniprot None Available
Name and Synonyms zinc finger and SCAN domain containing 4 None Available				IHOP None Available
				RefSeq None Available
Description Mus musculus BAC clone RP23-35L23 from chromosome 7, complete sequence.				JASPAR N/A

-PBM Motif Data for Zscan4
Primary Motif (Seed-And-Wobble)				Primary PWM View Save
Primary Motif (Seed-And-Wobble)				Top Kmer TGTGCACA E.S. 0.499 TGTGCACA E.S. 0.499
Secondary Motif (Seed-And-Wobble)				Secondary PWM View Save
Secondary Motif (Seed-And-Wobble)				Top Kmer GCACACAA E.S. 0.487 TTGTGTGC E.S. 0.487
Motif (BEEML-PBM) (AMADID # 015681) (clone pTH2667)				PWM View
Motif (BEEML-PBM) (AMADID # 015681) (clone pTH2667)				Consensus NNNNWHNNNN NNNNDWNNNN
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2667)				PWM View
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2667)				Consensus NNGCACANNN NNNTGTGCNN
Downloads Download the zip of all Zscan4 PBM files or view the downloads directory for individual files.
Link to TFBSshape This link will take you to the corresponding entry for Zscan4 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites. http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=26&sourceDB=uniprobe

-Zscan4 Datasets
Clone ID	Expression	Array Version	Expression Protocol	Clone Type	Last Modified	Save	View
pTH2667	#1	AMADID #016060	E. coli	DNA binding domain only	2016-03-24
Clone ID	Expression	Array Version	Expression Protocol	Clone Type	Last Modified	Save	View
pTH2667	#1	AMADID #015681	E. coli	DNA binding domain only	2016-03-24
Clone pTH2667 insert sequence `1 TFEGYQERLQ RDPKPYKCEE CPRTFKYPCN LSIHQKTHRK ERPFFCKECQ 51 IGFYQKSELH DHEVIHKAEK PFACSTCGRA FRYKTNLQAH ERIHTGEKPY 101 SCSLCNSSFR QSSTFHRHLR KFHKSE` DNA Binding Domains (Pfam) for clone 2667 Region 16..38 `1 YKCEECPRTF KYPCNLSIHQ KTH` Region 44..66 `1 FFCKECQIGF YQKSELHDHE VIH` Region 72..94 `1 FACSTCGRAF RYKTNLQAHE RIH` Region 100..123 `1 YSCSLCNSSF RQSSTFHRHL RKFH`
References `Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009`