-Genomic Data Links
Protein
Sox11
UniPROBE Accession Number
UP00030
Species
Mus musculus
Domain
HMG_box
Name and Synonyms
SRY-box containing gene 11
1110038H03Rik, 6230403H02Rik, AI836553, end1, Sox-11, Transcription factor SOX-11
Description
None Available
-PBM Motif Data for Sox11
Primary Motif (Seed-And-Wobble)
Image Not Available.  We apologize for the inconvenience.
Primary PWM
View       Save
Top Kmer
AACAAAGG E.S. 0.488
CCTTTGTT E.S. 0.488
Secondary Motif (Seed-And-Wobble)
Image Not Available.  We apologize for the inconvenience.
Secondary PWM
View       Save
Top Kmer
AATTGTT..G E.S. 0.479
C..AACAATT E.S. 0.479
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH2266)
Image Not Available.  We apologize for the inconvenience.
PWM
View
Consensus
HWTTGTBNNN
NNNVACAAWD
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2266)
Image Not Available.  We apologize for the inconvenience.
PWM
View
Consensus
NNDVACAAWR
YWTTGTBHNN
Downloads
Download the zip of all Sox11 PBM files or view the downloads directory for individual files.
Link to TFBSshape
This link will take you to the corresponding entry for Sox11 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=30&sourceDB=uniprobe

-Sox11 Datasets
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH2266 #1 AMADID #016060 IVT DNA binding domain only 2016-03-24 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH2266 #1 AMADID #015681 IVT DNA binding domain only 2016-03-24 save search
Clone pTH2266 insert sequence
1    ALDESDTDWC KTASGHIKRP MNAFMVWSKI ERRKIMEQSP DMHNAEISKR
51   LGKRWKMLKD SEKIPFIREA ERLRLKHMAD YPDYKYRPRK KPKTDSAAKP
101  S

DNA Binding Domains (Pfam) for clone 2266
Region 17..85
1   IKRPMNAFMV WSKIERRKIM EQSPDMHNAE ISKRLGKRWK MLKDSEKIPF
51  IREAERLRLK HMADYPDYK
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


Supported Browsers:IE 7.0.6001.18000, Firefox 3.5.11, Google Chrome 5.0.375.125 beta