Protein Details

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Genomic Data
PBM Motif Data
PBM Clones
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-Genomic Data				Links
Protein Sox7	UniPROBE Accession Number UP00034	Species Mus musculus	Domain HMG_box	Uniprot P40646
Name and Synonyms SRY-box containing gene 7 mSOX7, Sox-7, Transcription factor SOX-7				IHOP 124785
				RefSeq NP_035576
Description None Available				JASPAR N/A

-PBM Motif Data for Sox7
Primary Motif (Seed-And-Wobble)				Primary PWM View Save
Primary Motif (Seed-And-Wobble)				Top Kmer AACAATAG E.S. 0.487 CTATTGTT E.S. 0.487
Secondary Motif (Seed-And-Wobble)				Secondary PWM View Save
Secondary Motif (Seed-And-Wobble)				Top Kmer ATTGT.TG.G E.S. 0.467 C.CA.ACAAT E.S. 0.467
Motif (BEEML-PBM) (AMADID # 015681) (clone pTH3460)				PWM View
Motif (BEEML-PBM) (AMADID # 015681) (clone pTH3460)				Consensus NNNNNWBAAT ATTVWNNNNN
Motif (BEEML-PBM) (AMADID # 015681) (clone pTH4972)				PWM View
Motif (BEEML-PBM) (AMADID # 015681) (clone pTH4972)				Consensus NNNNNWBAAT ATTVWNNNNN
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH4972)				PWM View
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH4972)				Consensus ATTVWNNNNN NNNNNWBAAT
Downloads Download the zip of all Sox7 PBM files or view the downloads directory for individual files.
Link to TFBSshape This link will take you to the corresponding entry for Sox7 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites. http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=34&sourceDB=uniprobe

-Sox7 Datasets
Clone ID	Expression	Array Version	Expression Protocol	Clone Type	Last Modified	Save	View
pTH3460	#1	AMADID #015681	E. coli	DNA binding domain only	2016-03-24
Clone ID	Expression	Array Version	Expression Protocol	Clone Type	Last Modified	Save	View
pTH3460	#1	AMADID #016060	E. coli	DNA binding domain only	2016-03-24
Clone ID	Expression	Array Version	Expression Protocol	Clone Type	Last Modified	Save	View
pTH4972	#1	AMADID #016060	IVT	Full length clone	2016-03-24
Clone ID	Expression	Array Version	Expression Protocol	Clone Type	Last Modified	Save	View
pTH4972	#1	AMADID #015681	IVT	Full length clone	2016-03-24
Clone pTH3460 insert sequence `1 PPAVPRPSGD KSSESRIRRP MNAFMVWAKD ERKRLAVQNP DLHNAELSKM 51 LGKSWKALTL SQKRPYVDEA ERLRLQHMQD YPNYKYRPRR KKQGKRLCKR 101 V` DNA Binding Domains (Pfam) for clone 3460 Region 17..85 `1 IRRPMNAFMV WAKDERKRLA VQNPDLHNAE LSKMLGKSWK ALTLSQKRPY 51 VDEAERLRLQ HMQDYPNYK`
References `Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009`
Clone pTH4972 insert sequence `1 MASLLGAYPW PEGLECPALD AELSDGQSPP AVPRPPGDKG SESRIRRPMN 51 AFMVWAKDER KRLAVQNPDL HNAELSKMLG KSWKALTLSQ KRPYVDEAER 101 LRLQHMQDYP NYKYRPRRKK QAKRLCKRVD PGFLLSSLSR DQNALPEKRS 151 GSRGALGEKE DRGEYSPGTA LPSLRGCYHE GPAGGGGGGT PSSVDTYPYG 201 LPTPPEMSPL DVLEPEQTFF SSPCQEEHGH PRRIPHLPGH PYSPEYAPSP 251 LHCSHPLGSL ALGQSPGVSM MSPVPGCPPS PAYYSPATYH PLHSNLQAHL 301 GQLSPPPEHP GFDALDQLSQ VELLGDMDRN EFDQYLNTPG HPDSATGAMA 351 LSGHVPVSQV TPTGPTETSL ISVLADATAT YYNSYSVS` DNA Binding Domains (Pfam) for clone 4972 Not Available
References `Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009`