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| -Genomic Data |
Links |
- Protein
- Myf6
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- UniPROBE Accession Number
- UP00036
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- Species
- Mus musculus
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- Domain
- BASIC, HLH
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- Uniprot
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P15375
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- Name and Synonyms
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myogenic factor 6
herculin, Herculin, MRF4, Myf-6, Myogenic factor 6
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- IHOP
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123007
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- RefSeq
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NP_032683
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- Description
- None Available
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- JASPAR
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N/A
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| -PBM Motif Data for Myf6 |
- Primary Motif (Seed-And-Wobble)
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- Primary PWM
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View
Save
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- Top Kmer
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AACAG.TG.C E.S. 0.494
G.CA.CTGTT E.S. 0.494
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- Secondary Motif (Seed-And-Wobble)
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- Secondary PWM
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View
Save
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- Top Kmer
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AACAG.CGC E.S. 0.455
GCG.CTGTT E.S. 0.455
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-
Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH3824)
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- PWM
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View
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- Consensus
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RDCADNYGNN
NNCRNHTGHY
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Motif (BEEML-PBM) (AMADID # 016060) (clone pTH3824)
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- PWM
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View
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- Consensus
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NNNNNTGNBN
NVNCANNNNN
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- Downloads
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Download the
zip
of all Myf6 PBM files
or view the
downloads directory
for individual files.
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- Link to TFBSshape
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This link will take you to the corresponding entry for Myf6
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=36&sourceDB=uniprobe
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| -Myf6 Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH3824 |
#1 |
AMADID #016060 |
E. coli |
DNA binding domain only |
2016-03-24 |
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| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH3824 |
#1 |
AMADID #015681 |
E. coli |
DNA binding domain only |
2016-03-24 |
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- Clone pTH3824 insert sequence
- 1 MMMDLFETGS YFFYLDGENV TLQPLEVAEG SPLYPGSDGT LSPCQDQMPQ
51 EAGSDSSGEE HVLAPPGLQP PHCPGQCLIW ACKTCKRKSA PTDRRKAATL
101 RERRRLKKIN EAFEALKRRT VANPNQRLPK VEILRSAISY IERLQDLLHR
151 LDQQEKMQEL GVDPYSYKPK QEILEGADFL RTCSPQWPSV SDHSRGLVIT
201 AKEGGANVDA SASSSLQRLS SIVDSISSEE RKLPSVEEVV EK
- DNA Binding Domains (Pfam) for clone 3824
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Region 3..93
1 MDLFETGSYF FYLDGENVTL QPLEVAEGSP LYPGSDGTLS PCQDQMPQEA
51 GSDSSGEEHV LAPPGLQPPH CPGQCLIWAC KTCKRKSAPT D
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Region 94..145
1 RRKAATLRER RRLKKINEAF EALKRRTVAN PNQRLPKVEI LRSAISYIER
51 LQ
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- References
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Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
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