|
|
| -Genomic Data |
Links |
- Protein
- Spdef
|
- UniPROBE Accession Number
- UP00038
|
- Species
- Mus musculus
|
- Domain
- ETS
|
- Uniprot
-
Q9WTP3
|
- Name and Synonyms
-
SAM pointed domain containing ets transcription factor
Pdef, PDEF, Prostate-derived Ets factor, Prostate epithelium-specific Ets transcription factor, Prostate-specific Ets, Pse, SAM pointed domain-containing Ets transcription factor
|
- IHOP
-
127351
|
- RefSeq
-
NP_038919
|
- Description
- Mus musculus prostate specific ets transcription factor (Pse-pending), mRNA
|
- JASPAR
-
N/A
|
| -PBM Motif Data for Spdef |
- Primary Motif (Seed-And-Wobble)
-
|
- Primary PWM
-
View
Save
|
- Top Kmer
-
A.ATCCGG.T E.S. 0.494
A.CCGGAT.T E.S. 0.494
|
- Secondary Motif (Seed-And-Wobble)
-
|
- Secondary PWM
-
View
Save
|
- Top Kmer
-
A.ATCCTA.T E.S. 0.472
A.TAGGAT.T E.S. 0.472
|
-
Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH0905)
-
|
- PWM
-
View
|
- Consensus
-
DNVMGGAHNH
DNDTCCKBNH
|
-
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH0905)
-
|
- PWM
-
View
|
- Consensus
-
DNDTCCKBNN
NNVMGGAHNH
|
- Downloads
-
Download the
zip
of all Spdef PBM files
or view the
downloads directory
for individual files.
|
- Link to TFBSshape
-
This link will take you to the corresponding entry for Spdef
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=38&sourceDB=uniprobe
|
| -Spdef Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
|
pTH905 |
#1 |
AMADID #016060 |
E. coli |
DNA binding domain only |
2016-03-24 |
|
|
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
|
pTH905 |
#1 |
AMADID #015681 |
E. coli |
DNA binding domain only |
2016-03-24 |
|
|
- Clone pTH905 insert sequence
- 1 EGWTDGEVDS SCSGQPIHLW QFLKELLLKP HSYGRFIRWL NKEKGIFKIE
51 DSAQVARLWG VRKNRPAMNY DKLSRSIRQY YKKGIIRKPD ISQRLVYQFV
101 HPV
- DNA Binding Domains (Pfam) for clone 905
-
Region 16..102
1 PIHLWQFLKE LLLKPHSYGR FIRWLNKEKG IFKIEDSAQV ARLWGVRKNR
51 PAMNYDKLSR SIRQYYKKGI IRKPDISQRL VYQFVHP
-
|
- References
-
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
|
|