-Genomic Data Links
Protein
Spdef
UniPROBE Accession Number
UP00038
Species
Mus musculus
Domain
ETS
Name and Synonyms
SAM pointed domain containing ets transcription factor
Pdef, PDEF, Prostate-derived Ets factor, Prostate epithelium-specific Ets transcription factor, Prostate-specific Ets, Pse, SAM pointed domain-containing Ets transcription factor
Description
Mus musculus prostate specific ets transcription factor (Pse-pending), mRNA
-PBM Motif Data for Spdef
Primary Motif (Seed-And-Wobble)
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Primary PWM
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Top Kmer
A.ATCCGG.T E.S. 0.494
A.CCGGAT.T E.S. 0.494
Secondary Motif (Seed-And-Wobble)
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Secondary PWM
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Top Kmer
A.ATCCTA.T E.S. 0.472
A.TAGGAT.T E.S. 0.472
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH0905)
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PWM
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Consensus
DNVMGGAHNH
DNDTCCKBNH
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH0905)
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PWM
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Consensus
DNDTCCKBNN
NNVMGGAHNH
Downloads
Download the zip of all Spdef PBM files or view the downloads directory for individual files.
Link to TFBSshape
This link will take you to the corresponding entry for Spdef in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=38&sourceDB=uniprobe

-Spdef Datasets
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH905 #1 AMADID #016060 E. coli DNA binding domain only 2016-03-24 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH905 #1 AMADID #015681 E. coli DNA binding domain only 2016-03-24 save search
Clone pTH905 insert sequence
1    EGWTDGEVDS SCSGQPIHLW QFLKELLLKP HSYGRFIRWL NKEKGIFKIE
51   DSAQVARLWG VRKNRPAMNY DKLSRSIRQY YKKGIIRKPD ISQRLVYQFV
101  HPV

DNA Binding Domains (Pfam) for clone 905
Region 16..102
1   PIHLWQFLKE LLLKPHSYGR FIRWLNKEKG IFKIEDSAQV ARLWGVRKNR
51  PAMNYDKLSR SIRQYYKKGI IRKPDISQRL VYQFVHP
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


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