-Genomic Data Links
Protein
Foxj1
UniPROBE Accession Number
UP00041
Species
Mus musculus
Domain
Fork_head
Name and Synonyms
forkhead box J1
Fkhl13, FKHL-13, Forkhead box protein J1, Forkhead-related protein FKHL13, Hepatocyte nuclear factor 3 forkhead homolog 4, Hfh4, HFH-4
Description
forkhead box J1 [Mus musculus]
-PBM Motif Data for Foxj1
Primary Motif (Seed-And-Wobble)
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Primary PWM
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Top Kmer
GTAAACA.A E.S. 0.491
T.TGTTTAC E.S. 0.491
Secondary Motif (Seed-And-Wobble)
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Secondary PWM
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Top Kmer
T.ACAACAA E.S. 0.469
TTGTTGT.A E.S. 0.469
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH3125)
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PWM
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Consensus
NNTGTDDNNN
NNNHHACANN
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH3125)
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PWM
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Consensus
NNNHHDYDNN
NNHRHDDNNN
Downloads
Download the zip of all Foxj1 PBM files or view the downloads directory for individual files.
Link to TFBSshape
This link will take you to the corresponding entry for Foxj1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=41&sourceDB=uniprobe

-Foxj1 Datasets
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3125 #1 AMADID #016060 E. coli DNA binding domain only 2016-03-24 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3125 #1 AMADID #015681 E. coli DNA binding domain only 2016-03-24 save search
Clone pTH3125 insert sequence
1    LQAPPPDDVD YATNPHVKPP YSYATLICMA MQASKATKIT LSAIYKWITD
51   NFCYFRHADP TWQNSIRHNL SLNKCFIKVP REKDEPGKGG FWRIDPQYAE
101  RLLSGAFKKR RLPPVHIHPA FARQASQE

DNA Binding Domains (Pfam) for clone 3125
Region 18..113
1   KPPYSYATLI CMAMQASKAT KITLSAIYKW ITDNFCYFRH ADPTWQNSIR
51  HNLSLNKCFI KVPREKDEPG KGGFWRIDPQ YAERLLSGAF KKRRLP
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


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