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| -Genomic Data |
Links |
- Protein
- Foxj1
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- UniPROBE Accession Number
- UP00041
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- Species
- Mus musculus
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- Domain
- Fork_head
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- Uniprot
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Q61660
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- Name and Synonyms
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forkhead box J1
Fkhl13, FKHL-13, Forkhead box protein J1, Forkhead-related protein FKHL13, Hepatocyte nuclear factor 3 forkhead homolog 4, Hfh4, HFH-4
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- IHOP
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121649
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- RefSeq
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NP_032266
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- Description
- forkhead box J1 [Mus musculus]
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- JASPAR
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N/A
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| -PBM Motif Data for Foxj1 |
- Primary Motif (Seed-And-Wobble)
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- Primary PWM
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View
Save
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- Top Kmer
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GTAAACA.A E.S. 0.491
T.TGTTTAC E.S. 0.491
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- Secondary Motif (Seed-And-Wobble)
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- Secondary PWM
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View
Save
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- Top Kmer
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T.ACAACAA E.S. 0.469
TTGTTGT.A E.S. 0.469
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Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH3125)
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- PWM
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View
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- Consensus
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NNTGTDDNNN
NNNHHACANN
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Motif (BEEML-PBM) (AMADID # 016060) (clone pTH3125)
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- PWM
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View
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- Consensus
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NNNHHDYDNN
NNHRHDDNNN
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- Downloads
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Download the
zip
of all Foxj1 PBM files
or view the
downloads directory
for individual files.
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- Link to TFBSshape
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This link will take you to the corresponding entry for Foxj1
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=41&sourceDB=uniprobe
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| -Foxj1 Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH3125 |
#1 |
AMADID #016060 |
E. coli |
DNA binding domain only |
2016-03-24 |
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| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH3125 |
#1 |
AMADID #015681 |
E. coli |
DNA binding domain only |
2016-03-24 |
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- Clone pTH3125 insert sequence
- 1 LQAPPPDDVD YATNPHVKPP YSYATLICMA MQASKATKIT LSAIYKWITD
51 NFCYFRHADP TWQNSIRHNL SLNKCFIKVP REKDEPGKGG FWRIDPQYAE
101 RLLSGAFKKR RLPPVHIHPA FARQASQE
- DNA Binding Domains (Pfam) for clone 3125
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Region 18..113
1 KPPYSYATLI CMAMQASKAT KITLSAIYKW ITDNFCYFRH ADPTWQNSIR
51 HNLSLNKCFI KVPREKDEPG KGGFWRIDPQ YAERLLSGAF KKRRLP
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- References
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Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
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