-Genomic Data Links
Protein
Gm397
UniPROBE Accession Number
UP00042
Species
Mus musculus
Domain
zf-C2H2
Name and Synonyms
gene model 397, (NCBI)
LOC245109
Description
Mus musculus similar to Zinc finger protein 58 (Zfp-58) (Zinc finger protein Mfg-1) (LOC212386), mRNA
-PBM Motif Data for Gm397
Primary Motif (Seed-And-Wobble)
Image Not Available.  We apologize for the inconvenience.
Primary PWM
View       Save
Top Kmer
TGTGCACA E.S. 0.499
TGTGCACA E.S. 0.499
Secondary Motif (Seed-And-Wobble)
Image Not Available.  We apologize for the inconvenience.
Secondary PWM
View       Save
Top Kmer
GCACACAC E.S. 0.498
GTGTGTGC E.S. 0.498
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH1753)
Image Not Available.  We apologize for the inconvenience.
PWM
View
Consensus
NVTGKABNNN
NNNVTMCABN
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH1753)
Image Not Available.  We apologize for the inconvenience.
PWM
View
Consensus
NNNTGTGCNN
NNGCACANNN
Downloads
Download the zip of all Gm397 PBM files or view the downloads directory for individual files.
Link to TFBSshape
This link will take you to the corresponding entry for Gm397 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=42&sourceDB=uniprobe

-Gm397 Datasets
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH1753 #1 AMADID #016060 E. coli DNA binding domain only 2016-03-24 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH1753 #1 AMADID #015681 E. coli DNA binding domain only 2016-03-24 save search
Clone pTH1753 insert sequence
1    PCKSHQKRFC RDAKLYKCEE CSRMFKHARS LSSHQRTHLN KKSELLCVTC
51   QKMFKRVSDR RTHEIIHMPE KPFKCSTCEK SFSHKTNLKS HEMIHTGEMP
101  YVCSLCSRRF RQSSTYHRHL RNYHRSD

DNA Binding Domains (Pfam) for clone 1753
Region 16..38
1   YKCEECSRMF KHARSLSSHQ RTH

Region 73..95
1   FKCSTCEKSF SHKTNLKSHE MIH

Region 101..124
1   YVCSLCSRRF RQSSTYHRHL RNYH
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


Supported Browsers:IE 7.0.6001.18000, Firefox 3.5.11, Google Chrome 5.0.375.125 beta