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| -Genomic Data |
Links |
- Protein
- Tcfap2a
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- UniPROBE Accession Number
- UP00005
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- Species
- Mus musculus
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- Domain
- AP-2
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- Uniprot
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P34056
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- Name and Synonyms
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transcription factor AP-2, alpha
Activating enhancer-binding protein 2 alpha, Activator protein 2, Ap2, AP-2, Ap-2 (a), AP2-alpha, AP-2 alpha, Ap2tf, Tfap2a, Transcription factor AP-2 alpha
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- IHOP
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125389
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- RefSeq
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NP_035677
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- Description
- Mus musculus transcription factor AP-2, alpha, mRNA
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- JASPAR
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N/A
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| -PBM Motif Data for Tcfap2a |
- Primary Motif (Seed-And-Wobble)
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- Primary PWM
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View
Save
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- Top Kmer
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GCCT.AGGC E.S. 0.496
GCCT.AGGC E.S. 0.496
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- Secondary Motif (Seed-And-Wobble)
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- Secondary PWM
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View
Save
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- Top Kmer
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GCC..AGGGC E.S. 0.471
GCCCT..GGC E.S. 0.471
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Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH2337)
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- PWM
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View
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- Consensus
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SCYBVVGGSN
NSCCBBVRGS
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Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2337)
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- PWM
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View
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- Consensus
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HGCCBBVRGS
SCYBVVGGCD
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- Downloads
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Download the
zip
of all Tcfap2a PBM files
or view the
downloads directory
for individual files.
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- Link to TFBSshape
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This link will take you to the corresponding entry for Tcfap2a
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=5&sourceDB=uniprobe
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| -Tcfap2a Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2337 |
#1 |
AMADID #016060 |
E. coli |
DNA binding domain only |
2016-03-24 |
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| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2337 |
#1 |
AMADID #015681 |
E. coli |
DNA binding domain only |
2016-03-24 |
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- Clone pTH2337 insert sequence
- 1 AIPINKDNLF GGVVNPNEVF CSVPGRLSLL SSTSKYKVTV AEVQRRLSPP
51 ECLNASLLGG VLRRAKSKNG GRSLREKLDK IGLNLPAGRR KAANVTLLTS
101 LVEGEAVHLA RDFGYVCETE FPAKAVAEFL NRQHSDPNEQ VARKNMLLAT
151 KQICKEFTDL LAQDRSPLGN SRPNPILEPG IQSCLTHFNL ISHGFGSPAV
201 CAAVTALQNY LTEALKAMDK MYLSNNPNSH TDNSAKSS
- DNA Binding Domains (Pfam) for clone 2337
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Region 16..223
1 PNEVFCSVPG RLSLLSSTSK YKVTVAEVQR RLSPPECLNA SLLGGVLRRA
51 KSKNGGRSLR EKLDKIGLNL PAGRRKAANV TLLTSLVEGE AVHLARDFGY
101 VCETEFPAKA VAEFLNRQHS DPNEQVARKN MLLATKQICK EFTDLLAQDR
151 SPLGNSRPNP ILEPGIQSCL THFNLISHGF GSPAVCAAVT ALQNYLTEAL
201 KAMDKMYL
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- References
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Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
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