-Genomic Data Links
Protein
Hbp1
UniPROBE Accession Number
UP00055
Species
Mus musculus
Domain
HMG_box
Name and Synonyms
high mobility group box transcription factor 1
1700058O05Rik, BE629963, C330012F01Rik, C86454, High mobility group box transcription factor 1, HMG box-containing protein 1, HMG box transcription factor 1
Description
None Available
-PBM Motif Data for Hbp1
Primary Motif (Seed-And-Wobble)
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Primary PWM
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Top Kmer
TGAATGAA E.S. 0.495
TTCATTCA E.S. 0.495
Secondary Motif (Seed-And-Wobble)
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Secondary PWM
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Top Kmer
CCATTGT..A E.S. 0.444
T..ACAATGG E.S. 0.444
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH2241)
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PWM
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Consensus
NNNNWAWNDN
NHNWTWNNNN
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2241)
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PWM
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Consensus
NNNNDDNNDN
NHNNHHNNNN
Downloads
Download the zip of all Hbp1 PBM files or view the downloads directory for individual files.
Link to TFBSshape
This link will take you to the corresponding entry for Hbp1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=55&sourceDB=uniprobe

-Hbp1 Datasets
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH2241 #1 AMADID #016060 IVT DNA binding domain only 2016-03-24 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH2241 #1 AMADID #015681 E. coli DNA binding domain only 2016-03-24 save search
Clone pTH2241 insert sequence
1   VKSHSSGTVS ATSPNKCKRP MNAFMLFAKK YRVEYTQMYP GKDNRAISVI
51  LGDRWKKMKN EERRMYTLEA KALAEEQKRL NPDCWKRKRT NSGSQQH

DNA Binding Domains (Pfam) for clone 2241
Region 17..86
1   CKRPMNAFML FAKKYRVEYT QMYPGKDNRA ISVILGDRWK KMKNEERRMY
51  TLEAKALAEE QKRLNPDCWK
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


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