-Genomic Data Links
Protein
Rfx4
UniPROBE Accession Number
UP00056
Species
Mus musculus
Domain
RFX
Name and Synonyms
regulatory factor X, 4 (influences HLA class II expression)
4933412G19Rik, NYD-sp10
Description
None Available
-PBM Motif Data for Rfx4
Primary Motif (Seed-And-Wobble)
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Primary PWM
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Top Kmer
C.TAGCAAC E.S. 0.499
GTTGCTA.G E.S. 0.499
Secondary Motif (Seed-And-Wobble)
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Secondary PWM
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Top Kmer
C.TGGTTAC E.S. 0.497
GTAACCA.G E.S. 0.497
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH3761)
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PWM
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Consensus
NSNNRRHDAC
GTHDYYNNSN
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH3761)
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PWM
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Consensus
NCNHRRYDAC
GTHRYYDNGN
Downloads
Download the zip of all Rfx4 PBM files or view the downloads directory for individual files.
Link to TFBSshape
This link will take you to the corresponding entry for Rfx4 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=56&sourceDB=uniprobe

-Rfx4 Datasets
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3761 #1 AMADID #016060 IVT DNA binding domain only 2016-03-24 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3761 #1 AMADID #015681 IVT DNA binding domain only 2016-03-24 save search
Clone pTH3761 insert sequence
1    RYSSHTSLGN VSNDENEEKE NNRASKPHST PATLQWLEEN YEIAEGVCIP
51   RSALYMHYLD FCEKNDTQPV NAASFGKIIR QQFPQLTTRR LGTRGQSKYH
101  YYGIAVKESS QYY

DNA Binding Domains (Pfam) for clone 3761
Region 16..98
1   NEEKENNRAS KPHSTPATLQ WLEENYEIAE GVCIPRSALY MHYLDFCEKN
51  DTQPVNAASF GKIIRQQFPQ LTTRRLGTRG QSK
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


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