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| -Genomic Data |
Links |
- Protein
- Zic2
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- UniPROBE Accession Number
- UP00057
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- Species
- Mus musculus
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- Domain
- zf-C2H2
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- Uniprot
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Q62520
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- Name and Synonyms
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Zic finger protein of the cerebellum 2
GENA 29, HPE5, Ku, odd-paired homolog, Zinc finger protein of the cerebellum 2, Zinc finger protein ZIC 2
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- IHOP
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126079
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- RefSeq
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NP_033600
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- Description
- Mus musculus Zic finger protein of the cerebellum 2 (Zic2)
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- JASPAR
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N/A
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| -PBM Motif Data for Zic2 |
- Primary Motif (Seed-And-Wobble)
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- Primary PWM
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View
Save
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- Top Kmer
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CCCC..GGGG E.S. 0.496
CCCC..GGGG E.S. 0.496
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- Secondary Motif (Seed-And-Wobble)
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- Secondary PWM
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View
Save
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- Top Kmer
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C.CAGCAGG E.S. 0.493
CCTGCTG.G E.S. 0.493
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Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH2895)
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- PWM
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View
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- Consensus
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NCMYVBNGNB
VNCNVBRKGN
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Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2895)
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- PWM
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View
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- Consensus
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NNHCMYRBNR
YNVYRKGDNN
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- Downloads
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Download the
zip
of all Zic2 PBM files
or view the
downloads directory
for individual files.
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- Link to TFBSshape
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This link will take you to the corresponding entry for Zic2
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=57&sourceDB=uniprobe
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| -Zic2 Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2895 |
#1 |
AMADID #016060 |
E. coli |
DNA binding domain only |
2016-03-24 |
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| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2895 |
#1 |
AMADID #015681 |
E. coli |
DNA binding domain only |
2016-03-24 |
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- Clone pTH2895 insert sequence
- 1 CIKQELICKW IDPEQLSNPK KSCNKTFSTM HELVTHVSVE HVGGPEQSNH
51 VCFWEECPRE GKPFKAKYKL VNHIRVHTGE KPFPCPFPGC GKVFARSENL
101 KIHKRTHTGE KPFQCEFEGC DRRFANSSDR KKHMHVHTSD KPYLCKMCDK
151 SYTHPSSLRK HMKVHESSPQ GSESSPAASS
- DNA Binding Domains (Pfam) for clone 2895
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Region 83..107
1 FPCPFPGCGK VFARSENLKI HKRTH
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Region 113..137
1 FQCEFEGCDR RFANSSDRKK HMHVH
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Region 143..165
1 YLCKMCDKSY THPSSLRKHM KVH
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- References
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Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
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