-Genomic Data Links
Protein
Zic2
UniPROBE Accession Number
UP00057
Species
Mus musculus
Domain
zf-C2H2
Name and Synonyms
Zic finger protein of the cerebellum 2
GENA 29, HPE5, Ku, odd-paired homolog, Zinc finger protein of the cerebellum 2, Zinc finger protein ZIC 2
Description
Mus musculus Zic finger protein of the cerebellum 2 (Zic2)
-PBM Motif Data for Zic2
Primary Motif (Seed-And-Wobble)
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Primary PWM
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Top Kmer
CCCC..GGGG E.S. 0.496
CCCC..GGGG E.S. 0.496
Secondary Motif (Seed-And-Wobble)
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Secondary PWM
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Top Kmer
C.CAGCAGG E.S. 0.493
CCTGCTG.G E.S. 0.493
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH2895)
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PWM
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Consensus
NCMYVBNGNB
VNCNVBRKGN
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2895)
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PWM
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Consensus
NNHCMYRBNR
YNVYRKGDNN
Downloads
Download the zip of all Zic2 PBM files or view the downloads directory for individual files.
Link to TFBSshape
This link will take you to the corresponding entry for Zic2 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=57&sourceDB=uniprobe

-Zic2 Datasets
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH2895 #1 AMADID #016060 E. coli DNA binding domain only 2016-03-24 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH2895 #1 AMADID #015681 E. coli DNA binding domain only 2016-03-24 save search
Clone pTH2895 insert sequence
1    CIKQELICKW IDPEQLSNPK KSCNKTFSTM HELVTHVSVE HVGGPEQSNH
51   VCFWEECPRE GKPFKAKYKL VNHIRVHTGE KPFPCPFPGC GKVFARSENL
101  KIHKRTHTGE KPFQCEFEGC DRRFANSSDR KKHMHVHTSD KPYLCKMCDK
151  SYTHPSSLRK HMKVHESSPQ GSESSPAASS

DNA Binding Domains (Pfam) for clone 2895
Region 83..107
1   FPCPFPGCGK VFARSENLKI HKRTH

Region 113..137
1   FQCEFEGCDR RFANSSDRKK HMHVH

Region 143..165
1   YLCKMCDKSY THPSSLRKHM KVH
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


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