-Genomic Data Links
Protein
Tcf3
UniPROBE Accession Number
UP00058
Species
Mus musculus
Domain
HMG_box
Name and Synonyms
transcription factor 3
HMG box transcription factor 3, mTCF-3, Tcf-3, TCF-3, Tcf7l1, Transcription factor 7-like 1
Description
None Available
-PBM Motif Data for Tcf3
Primary Motif (Seed-And-Wobble)
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Primary PWM
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Top Kmer
A.ATCAAAG E.S. 0.495
CTTTGAT.T E.S. 0.495
Secondary Motif (Seed-And-Wobble)
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Secondary PWM
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Top Kmer
C.AAAAAAA E.S. 0.406
TTTTTTT.G E.S. 0.406
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH3787)
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PWM
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Consensus
NHHWNNNNNN
NNNNNNWDDN
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH3787)
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PWM
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Consensus
NNNNNNWHDN
NHDWNNNNNN
Downloads
Download the zip of all Tcf3 PBM files or view the downloads directory for individual files.
Link to TFBSshape
This link will take you to the corresponding entry for Tcf3 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=58&sourceDB=uniprobe

-Tcf3 Datasets
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3787 #1 AMADID #016060 IVT DNA binding domain only 2016-03-24 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3787 #1 AMADID #015681 IVT DNA binding domain only 2016-03-24 save search
Clone pTH3787 insert sequence
1    AKSPVTVKKE EEKKPHVKKP LNAFMLYMKE MRAKVVAECT LKESAAINQI
51   LGRKWHNLSR EEQAKYYELA RKERQLHAQL YPTWSARDNY GKKKKRKREK
101  Q

DNA Binding Domains (Pfam) for clone 3787
Region 17..85
1   VKKPLNAFML YMKEMRAKVV AECTLKESAA INQILGRKWH NLSREEQAKY
51  YELARKERQL HAQLYPTWS
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


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