-Genomic Data Links
Protein
Arid5a
UniPROBE Accession Number
UP00059
Species
Mus musculus
Domain
BRIGHT
Name and Synonyms
AT rich interactive domain 5A (Mrf1 like)
D430024K22Rik, MGC36895, Mrf1
Description
None Available
-PBM Motif Data for Arid5a
Primary Motif (Seed-And-Wobble)
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Primary PWM
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Top Kmer
AATATTG..A E.S. 0.486
T..CAATATT E.S. 0.486
Secondary Motif (Seed-And-Wobble)
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Secondary PWM
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Top Kmer
T..AATACGA E.S. 0.402
TCGTATT..A E.S. 0.402
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH3770)
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PWM
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Consensus
NNNRWATHNN
NNDATWYNNN
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH3770)
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PWM
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Consensus
NNNNBNNNNN
NNNNNVNNNN
Downloads
Download the zip of all Arid5a PBM files or view the downloads directory for individual files.
Link to TFBSshape
This link will take you to the corresponding entry for Arid5a in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=59&sourceDB=uniprobe

-Arid5a Datasets
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3770 #1 AMADID #016060 IVT DNA binding domain only 2016-03-24 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3770 #1 AMADID #015681 IVT DNA binding domain only 2016-03-24 save search
Clone pTH3770 insert sequence
1    SRSQSPTQLQ DSPEAGGEQE EEQAFLVSLY KFMKERHTPI ERVPHLGFKQ
51   INLWKIYKAV EKLGAYELVT GRRLWKNVYD ELGGSPGSTS AATCTRRHYE
101  RLVLPYVRHL KGEDDKPLPP TKPRKQYKMA KELRGD

DNA Binding Domains (Pfam) for clone 3770
Region 16..121
1    GGEQEEEQAF LVSLYKFMKE RHTPIERVPH LGFKQINLWK IYKAVEKLGA
51   YELVTGRRLW KNVYDELGGS PGSTSAATCT RRHYERLVLP YVRHLKGEDD
101  KPLPPT
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


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