-Genomic Data Links
Protein
Foxl1
UniPROBE Accession Number
UP00061
Species
Mus musculus
Domain
Fork_head
Name and Synonyms
forkhead box L1
fkh6, Fkh6, fkh-6, Fkhl11, Forkhead box protein L1, Forkhead-related protein FKHL11, FREAC7, Transcription factor FKH-6
Description
M.musculus fkh-6 gene
-PBM Motif Data for Foxl1
Primary Motif (Seed-And-Wobble)
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Primary PWM
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Top Kmer
A..GTAAACA E.S. 0.498
TGTTTAC..T E.S. 0.498
Secondary Motif (Seed-And-Wobble)
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Secondary PWM
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Top Kmer
CAAAACAA E.S. 0.476
TTGTTTTG E.S. 0.476
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH2809)
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PWM
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Consensus
NNRTMAAYAN
NTRTTKAYNN
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2809)
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PWM
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Consensus
NTRTTKAYNN
NNRTMAAYAN
Downloads
Download the zip of all Foxl1 PBM files or view the downloads directory for individual files.
Link to TFBSshape
This link will take you to the corresponding entry for Foxl1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=61&sourceDB=uniprobe

-Foxl1 Datasets
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH2809 #1 AMADID #016060 E. coli DNA binding domain only 2016-03-24 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH2809 #1 AMADID #015681 E. coli DNA binding domain only 2016-03-24 save search
Clone pTH2809 insert sequence
1    FAPAAALAGP GRVEPPQKPP YSYIALIAMA IQDAPEQRVT LNGIYQFIMD
51   RFPFYHDNRQ GWQNSIRHNL SLNECFVKVP REKGRPGKGS YWTLDPRCLD
101  MFENGNYRRR KRKPKPAAGS PEAKRTRV

DNA Binding Domains (Pfam) for clone 2809
Region 18..113
1   KPPYSYIALI AMAIQDAPEQ RVTLNGIYQF IMDRFPFYHD NRQGWQNSIR
51  HNLSLNECFV KVPREKGRPG KGSYWTLDPR CLDMFENGNY RRRKRK
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


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