-Genomic Data Links
Protein
Hoxa3
UniPROBE Accession Number
UP00063
Species
Mus musculus
Domain
Homeobox
Name and Synonyms
homeo box A3
Homeobox protein Hox-A3, Hox-1.5, Hoxa-3, Mo-10, MO-10
Description
Mus musculus homeo box A3 (Hoxa3)
-PBM Motif Data for Hoxa3
Primary Motif (Seed-And-Wobble)
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Primary PWM
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Top Kmer
G.G.TAATTA E.S. 0.494
TAATTA.C.C E.S. 0.494
Secondary Motif (Seed-And-Wobble)
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Secondary PWM
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Top Kmer
AA.C.ATTAA E.S. 0.480
TTAAT.G.TT E.S. 0.480
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH2783)
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PWM
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Consensus
NNNYMATTAN
NTAATKRNNN
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2783)
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PWM
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Consensus
NTAATKRNNN
NNNYMATTAN
Downloads
Download the zip of all Hoxa3 PBM files or view the downloads directory for individual files.
Link to TFBSshape
This link will take you to the corresponding entry for Hoxa3 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=63&sourceDB=uniprobe

-Hoxa3 Datasets
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH2783 #1 AMADID #016060 E. coli DNA binding domain only 2016-03-24 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH2783 #1 AMADID #015681 E. coli DNA binding domain only 2016-03-24 save search
Clone pTH2783 insert sequence
1   GESCAGDKSP PGQASSKRAR TAYTSAQLVE LEKEFHFNRY LCRPRRVEMA
51  NLLNLTERQI KIWFQNRRMK YKKDQKGKGM LTSSGGQSPS RSP

DNA Binding Domains (Pfam) for clone 2783
Region 17..73
1   KRARTAYTSA QLVELEKEFH FNRYLCRPRR VEMANLLNLT ERQIKIWFQN
51  RRMKYKK
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


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