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| -Genomic Data |
Links |
- Protein
- Hnf4a
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- UniPROBE Accession Number
- UP00066
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- Species
- Mus musculus
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- Domain
- ZnF_C4
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- Uniprot
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P49698
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- Name and Synonyms
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hepatic nuclear factor 4, alpha
D19Mgi10, Hepatocyte nuclear factor 4-alpha, Hnf4, Hnf-4, HNF-4, HNF4 alpha, HNF-4-alpha, MODY1, Nr2a1, Nuclear receptor 2A1, Tcf14, Tcf4, Transcription factor 14, Transcription factor HNF-4
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- IHOP
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121714
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- RefSeq
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NP_032287
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- Description
- Mus musculus hepatic nuclear factor 4, alpha (Hnf4a), mRNA
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- JASPAR
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MA0114
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| -PBM Motif Data for Hnf4a |
- Primary Motif (Seed-And-Wobble)
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- Primary PWM
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View
Save
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- Top Kmer
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GGGGTCAA E.S. 0.495
TTGACCCC E.S. 0.495
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- Secondary Motif (Seed-And-Wobble)
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- Secondary PWM
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View
Save
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- Top Kmer
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AAAGTCCA E.S. 0.497
TGGACTTT E.S. 0.497
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-
Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH2640)
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- PWM
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View
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- Consensus
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NNNBRACYYN
NRRGTYVNNN
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Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2640)
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- PWM
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View
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- Consensus
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NNNBRACYYN
NRRGTYVNNN
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- Downloads
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Download the
zip
of all Hnf4a PBM files
or view the
downloads directory
for individual files.
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- Link to TFBSshape
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This link will take you to the corresponding entry for Hnf4a
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=66&sourceDB=uniprobe
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| -Hnf4a Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2640 |
#1 |
AMADID #016060 |
E. coli |
DNA binding domain only |
2016-03-24 |
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| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2640 |
#1 |
AMADID #015681 |
E. coli |
DNA binding domain only |
2016-03-24 |
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- Clone pTH2640 insert sequence
- 1 PSEGANLNSS NSLGVSALCA ICGDRATGKH YGASSCDGCK GFFRRSVRKN
51 HMYSCRFSRQ CVVDKDKRNQ CRYCRLKKCF RAGMKKEAVQ NERDRISTRR
101 SSYEDSS
- DNA Binding Domains (Pfam) for clone 2640
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Region 17..92
1 ALCAICGDRA TGKHYGASSC DGCKGFFRRS VRKNHMYSCR FSRQCVVDKD
51 KRNQCRYCRL KKCFRAGMKK EAVQNE
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- References
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Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
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