Protein Details

-Genomic Data				Links
Protein Sox1	UniPROBE Accession Number UP00069	Species Mus musculus	Domain HMG_box	Uniprot P53783
Name and Synonyms SRY-box containing gene 1 Sox-1, SOX-1 protein				IHOP 124770
				RefSeq NP_033259
Description None Available				JASPAR N/A

-PBM Motif Data for Sox1
Primary Motif (Seed-And-Wobble)				Primary PWM View Save
Primary Motif (Seed-And-Wobble)				Top Kmer AATTCAAT E.S. 0.469 ATTGAATT E.S. 0.469
Secondary Motif (Seed-And-Wobble)				Secondary PWM View Save
Secondary Motif (Seed-And-Wobble)				Top Kmer T.ATTGTTA E.S. 0.410 TAACAAT.A E.S. 0.410
Motif (BEEML-PBM) (AMADID # 015681) (clone pTH2631)				PWM View
Motif (BEEML-PBM) (AMADID # 015681) (clone pTH2631)				Consensus NNNNNWBAAW WTTVWNNNNN
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2631)				PWM View
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2631)				Consensus NHDTWVDNNN NNNHBWAHDN
Downloads Download the zip of all Sox1 PBM files or view the downloads directory for individual files.
Link to TFBSshape This link will take you to the corresponding entry for Sox1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites. http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=69&sourceDB=uniprobe

-Sox1 Datasets
Clone ID	Expression	Array Version	Expression Protocol	Clone Type	Last Modified	Save	View
pTH2631	#1	AMADID #016060	IVT	DNA binding domain only	2016-03-24
Clone ID	Expression	Array Version	Expression Protocol	Clone Type	Last Modified	Save	View
pTH2631	#1	AMADID #015681	IVT	DNA binding domain only	2016-03-24
Clone pTH2631 insert sequence `1 GGGGGGGTKA NQDRVKRPMN AFMVWSRGQR RKMAQENPKM HNSEISKRLG 51 AEWKVMSEAE KRPFIDEAKR LRALHMKEHP DYKYRPRRKT KTLLKKDKY` DNA Binding Domains (Pfam) for clone 2631 Region 15..83 `1 VKRPMNAFMV WSRGQRRKMA QENPKMHNSE ISKRLGAEWK VMSEAEKRPF 51 IDEAKRLRAL HMKEHPDYK`
References `Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009`