-Genomic Data Links
Protein
Sox1
UniPROBE Accession Number
UP00069
Species
Mus musculus
Domain
HMG_box
Name and Synonyms
SRY-box containing gene 1
Sox-1, SOX-1 protein
Description
None Available
-PBM Motif Data for Sox1
Primary Motif (Seed-And-Wobble)
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Primary PWM
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Top Kmer
AATTCAAT E.S. 0.469
ATTGAATT E.S. 0.469
Secondary Motif (Seed-And-Wobble)
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Secondary PWM
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Top Kmer
T.ATTGTTA E.S. 0.410
TAACAAT.A E.S. 0.410
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH2631)
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PWM
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Consensus
NNNNNWBAAW
WTTVWNNNNN
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2631)
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PWM
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Consensus
NHDTWVDNNN
NNNHBWAHDN
Downloads
Download the zip of all Sox1 PBM files or view the downloads directory for individual files.
Link to TFBSshape
This link will take you to the corresponding entry for Sox1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=69&sourceDB=uniprobe

-Sox1 Datasets
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH2631 #1 AMADID #016060 IVT DNA binding domain only 2016-03-24 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH2631 #1 AMADID #015681 IVT DNA binding domain only 2016-03-24 save search
Clone pTH2631 insert sequence
1   GGGGGGGTKA NQDRVKRPMN AFMVWSRGQR RKMAQENPKM HNSEISKRLG
51  AEWKVMSEAE KRPFIDEAKR LRALHMKEHP DYKYRPRRKT KTLLKKDKY

DNA Binding Domains (Pfam) for clone 2631
Region 15..83
1   VKRPMNAFMV WSRGQRRKMA QENPKMHNSE ISKRLGAEWK VMSEAEKRPF
51  IDEAKRLRAL HMKEHPDYK
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


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