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| -Genomic Data |
Links |
- Protein
- Egr1
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- UniPROBE Accession Number
- UP00007
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- Species
- Mus musculus
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- Domain
- zf-C2H2
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- Uniprot
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P08046
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- Name and Synonyms
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early growth response 1
A530045N19Rik, Early growth response protein 1, egr, Egr-1, EGR-1, ETR103, Krox-1, Krox24, Krox-24, Krox-24 protein, Nerve growth factor-induced protein A, NGF1-A, NGFIA, NGFI-A, TIS8, Transcription factor Zif268, Zenk, Zfp-6, Zif268
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- IHOP
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120755
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- RefSeq
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NP_031939
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- Description
- None Available
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- JASPAR
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N/A
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| -PBM Motif Data for Egr1 |
- Primary Motif (Seed-And-Wobble)
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- Primary PWM
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View
Save
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- Top Kmer
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CGCCCCC.C E.S. 0.497
G.GGGGGCG E.S. 0.497
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- Secondary Motif (Seed-And-Wobble)
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- Secondary PWM
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View
Save
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- Top Kmer
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GAGTGGGA E.S. 0.475
TCCCACTC E.S. 0.475
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Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH2580)
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- PWM
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View
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- Consensus
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NNVGKGGGHD
HDCCCMCBNN
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Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2580)
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- PWM
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View
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- Consensus
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NVVGKGGGHD
HDCCCMCBBN
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- Downloads
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Download the
zip
of all Egr1 PBM files
or view the
downloads directory
for individual files.
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- Link to TFBSshape
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This link will take you to the corresponding entry for Egr1
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=7&sourceDB=uniprobe
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| -Egr1 Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2580 |
#1 |
AMADID #016060 |
E. coli |
DNA binding domain only |
2016-03-24 |
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| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2580 |
#1 |
AMADID #015681 |
E. coli |
DNA binding domain only |
2016-03-24 |
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| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2580 |
#2 |
AMADID #016060 |
IVT |
DNA binding domain only |
2016-03-24 |
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| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2580 |
#2 |
AMADID #015681 |
IVT |
DNA binding domain only |
2016-03-24 |
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- Clone pTH2580 insert sequence
- 1 KYPNRPSKTP PHERPYACPV ESCDRRFSRS DELTRHIRIH TGQKPFQCRI
51 CMRNFSRSDH LTTHIRTHTG EKPFACDICG RKFARSDDRK RHTKIHLRQK
101 DKKADKSVVA S
- DNA Binding Domains (Pfam) for clone 2580
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Region 16..40
1 YACPVESCDR RFSRSDELTR HIRIH
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Region 46..68
1 FQCRICMRNF SRSDHLTTHI RTH
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Region 74..96
1 FACDICGRKF ARSDDRKRHT KIH
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- References
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Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
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