|
|
| -Genomic Data |
Links |
- Protein
- Gcm1
|
- UniPROBE Accession Number
- UP00070
|
- Species
- Mus musculus
|
- Domain
- GCM
|
- Uniprot
-
P70348
|
- Name and Synonyms
-
glial cells missing homolog 1 (Drosophila)
Chorion-specific transcription factor GCMa, Gcm 1, Gcm1-rs1, Gcma, GCMa, Gcm a, GCM motif protein 1, Gcm-rs2, glial cell deficient, Glial cells missing homolog 1, glide, mGCM1, mGCMa
|
- IHOP
-
121222
|
- RefSeq
-
NP_032129
|
- Description
- None Available
|
- JASPAR
-
N/A
|
| -PBM Motif Data for Gcm1 |
- Primary Motif (Seed-And-Wobble)
-
|
- Primary PWM
-
View
Save
|
- Top Kmer
-
ACCCGCAT E.S. 0.497
ATGCGGGT E.S. 0.497
|
- Secondary Motif (Seed-And-Wobble)
-
|
- Secondary PWM
-
View
Save
|
- Top Kmer
-
ATAGGGGA E.S. 0.478
TCCCCTAT E.S. 0.478
|
-
Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH3732)
-
|
- PWM
-
View
|
- Consensus
-
RCCCBYABNN
NNVTRVGGGY
|
-
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH3732)
-
|
- PWM
-
View
|
- Consensus
-
RCCCBYABNN
NNVTRVGGGY
|
- Downloads
-
Download the
zip
of all Gcm1 PBM files
or view the
downloads directory
for individual files.
|
- Link to TFBSshape
-
This link will take you to the corresponding entry for Gcm1
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=70&sourceDB=uniprobe
|
| -Gcm1 Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
|
pTH3732 |
#1 |
AMADID #016060 |
E. coli |
DNA binding domain only |
2016-03-24 |
|
|
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
|
pTH3732 |
#1 |
AMADID #015681 |
E. coli |
DNA binding domain only |
2016-03-24 |
|
|
- Clone pTH3732 insert sequence
- 1 MELDDFDPED KEILSWDIND VKLPQNVKTT DWFQEWPDSY VKHIYSSDDR
51 NAQRHLSSWA MRNTNNHNSR ILKKSCLGVV VCSRDCSTEE GRKIYLRPAI
101 CDKARQKQQR KSCPNCNGPL KLIPCRGHGG FPVTNFWRHD GRFIFFQSKG
151 EHDHPRPETK LEAEARRAMK KVHM
- DNA Binding Domains (Pfam) for clone 3732
-
Region 29..169
1 TTDWFQEWPD SYVKHIYSSD DRNAQRHLSS WAMRNTNNHN SRILKKSCLG
51 VVVCSRDCST EEGRKIYLRP AICDKARQKQ QRKSCPNCNG PLKLIPCRGH
101 GGFPVTNFWR HDGRFIFFQS KGEHDHPRPE TKLEAEARRA M
-
|
- References
-
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
|
|