-Genomic Data Links
Protein
IRC900814
UniPROBE Accession Number
UP00072
Species
Mus musculus
Domain
SAND
Name and Synonyms
None Available
None Available
Description
Arhgef12
-PBM Motif Data for IRC900814
Primary Motif (Seed-And-Wobble)
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Primary PWM
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Top Kmer
ACGACAAA E.S. 0.494
TTTGTCGT E.S. 0.494
Secondary Motif (Seed-And-Wobble)
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Secondary PWM
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Top Kmer
AAAGTCGT E.S. 0.489
ACGACTTT E.S. 0.489
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH3520)
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PWM
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Consensus
NNNCGNNNNN
NNNNNCGNNN
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH3520)
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PWM
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Consensus
NNNNNHRNNN
NNNYDNNNNN
Downloads
Download the zip of all IRC900814 PBM files or view the downloads directory for individual files.
Link to TFBSshape
This link will take you to the corresponding entry for IRC900814 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=72&sourceDB=uniprobe

-IRC900814 Datasets
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3520 #1 AMADID #016060 E. coli DNA binding domain only 2016-03-24 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3520 #1 AMADID #015681 E. coli DNA binding domain only 2016-03-24 save search
Clone pTH3520 insert sequence
1    NPGRTAKIRG LRRRRKENAD FSAELLPVTC GNLKGVLHKD KFKQGISVKS
51   IQCQNGNWFT PSEFEMMGGY GKSKNWKLSL RCHNWPLKLL IQRKFLPNPP
101  RIHRKRKEQR TQ

DNA Binding Domains (Pfam) for clone 3520
Region 16..97
1   KENADFSAEL LPVTCGNLKG VLHKDKFKQG ISVKSIQCQN GNWFTPSEFE
51  MMGGYGKSKN WKLSLRCHNW PLKLLIQRKF LP
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


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