-Genomic Data Links
Protein
Sox15
UniPROBE Accession Number
UP00075
Species
Mus musculus
Domain
HMG_box
Name and Synonyms
SRY-box containing gene 15
Sox-15, SOX-15 protein
Description
None Available
-PBM Motif Data for Sox15
Primary Motif (Seed-And-Wobble)
Image Not Available.  We apologize for the inconvenience.
Primary PWM
View       Save
Top Kmer
GAACAATA E.S. 0.464
TATTGTTC E.S. 0.464
Secondary Motif (Seed-And-Wobble)
Image Not Available.  We apologize for the inconvenience.
Secondary PWM
View       Save
Top Kmer
AATG.AATT E.S. 0.433
AATT.CATT E.S. 0.433
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH3457)
Image Not Available.  We apologize for the inconvenience.
PWM
View
Consensus
WTTVWNNNNN
NNNNNWBAAW
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH3457)
Image Not Available.  We apologize for the inconvenience.
PWM
View
Consensus
SARHSNNNNN
NNNNNSDYTS
Downloads
Download the zip of all Sox15 PBM files or view the downloads directory for individual files.
Link to TFBSshape
This link will take you to the corresponding entry for Sox15 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=75&sourceDB=uniprobe

-Sox15 Datasets
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3457 #1 AMADID #016060 E. coli DNA binding domain only 2016-03-24 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3457 #1 AMADID #015681 E. coli DNA binding domain only 2016-03-24 save search
Clone pTH3457 insert sequence
1    EAGGSPGASG GLPLEKVKRP MNAFMVWSSV QRRQMAQQNP KMHNSEISKR
51   LGAQWKLLGD EEKRPFVEEA KRLRARHLRD YPDYKYRPRR KSKNSSTGSV
101  P

DNA Binding Domains (Pfam) for clone 3457
Region 17..85
1   VKRPMNAFMV WSSVQRRQMA QQNPKMHNSE ISKRLGAQWK LLGDEEKRPF
51  VEEAKRLRAR HLRDYPDYK
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


Supported Browsers:IE 7.0.6001.18000, Firefox 3.5.11, Google Chrome 5.0.375.125 beta