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| -Genomic Data |
Links |
- Protein
- Arid3a
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- UniPROBE Accession Number
- UP00078
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- Species
- Mus musculus
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- Domain
- BRIGHT
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- Uniprot
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Q62431
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- Name and Synonyms
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AT rich interactive domain 3A (Bright like)
ARID domain-containing protein 3A, AT-rich interactive domain-containing protein 3A, B-cell regulator of IgH transcription, Bright, Dead ringer-like protein 1, Dri1, Dril1
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- IHOP
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120662
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- RefSeq
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NP_031906
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- Description
- None Available
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- JASPAR
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N/A
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| -PBM Motif Data for Arid3a |
- Primary Motif (Seed-And-Wobble)
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- Primary PWM
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View
Save
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- Top Kmer
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TTAATTAA E.S. 0.494
TTAATTAA E.S. 0.494
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- Secondary Motif (Seed-And-Wobble)
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- Secondary PWM
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View
Save
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- Top Kmer
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C.TATCAAA E.S. 0.473
TTTGATA.G E.S. 0.473
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Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH3875)
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- PWM
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View
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- Consensus
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NHWTDATHNN
NNDATHAWDN
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Motif (BEEML-PBM) (AMADID # 016060) (clone pTH3875)
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- PWM
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View
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- Consensus
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NHWTDATHNN
NNDATHAWDN
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- Downloads
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Download the
zip
of all Arid3a PBM files
or view the
downloads directory
for individual files.
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- Link to TFBSshape
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This link will take you to the corresponding entry for Arid3a
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=78&sourceDB=uniprobe
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| -Arid3a Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH3875 |
#1 |
AMADID #016060 |
E. coli |
DNA binding domain only |
2016-03-24 |
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| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH3875 |
#1 |
AMADID #015681 |
E. coli |
DNA binding domain only |
2016-03-24 |
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| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH3875 |
#2 |
AMADID #016060 |
IVT |
DNA binding domain only |
2016-03-24 |
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| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH3875 |
#2 |
AMADID #015681 |
IVT |
DNA binding domain only |
2016-03-24 |
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- Clone pTH3875 insert sequence
- 1 HGDWTFEEQF KQLYELDADP KRKEFLDDLF SFMQKRGTPV NRIPIMAKQV
51 LDLFMLYVLV TEKGGLVEVI NKKLWREITK GLNLPTSITS AAFTLRTQYM
101 KYLYPYECER RGLSSPNELQ AAIDSNRREG RRQSFGGSLF A
- DNA Binding Domains (Pfam) for clone 3875
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Region 16..126
1 LDADPKRKEF LDDLFSFMQK RGTPVNRIPI MAKQVLDLFM LYVLVTEKGG
51 LVEVINKKLW REITKGLNLP TSITSAAFTL RTQYMKYLYP YECERRGLSS
101 PNELQAAIDS N
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- References
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Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
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