-Genomic Data Links
Protein
Arid3a
UniPROBE Accession Number
UP00078
Species
Mus musculus
Domain
BRIGHT
Name and Synonyms
AT rich interactive domain 3A (Bright like)
ARID domain-containing protein 3A, AT-rich interactive domain-containing protein 3A, B-cell regulator of IgH transcription, Bright, Dead ringer-like protein 1, Dri1, Dril1
Description
None Available
-PBM Motif Data for Arid3a
Primary Motif (Seed-And-Wobble)
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Primary PWM
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Top Kmer
TTAATTAA E.S. 0.494
TTAATTAA E.S. 0.494
Secondary Motif (Seed-And-Wobble)
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Secondary PWM
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Top Kmer
C.TATCAAA E.S. 0.473
TTTGATA.G E.S. 0.473
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH3875)
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PWM
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Consensus
NHWTDATHNN
NNDATHAWDN
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH3875)
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PWM
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Consensus
NHWTDATHNN
NNDATHAWDN
Downloads
Download the zip of all Arid3a PBM files or view the downloads directory for individual files.
Link to TFBSshape
This link will take you to the corresponding entry for Arid3a in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=78&sourceDB=uniprobe

-Arid3a Datasets
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3875 #1 AMADID #016060 E. coli DNA binding domain only 2016-03-24 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3875 #1 AMADID #015681 E. coli DNA binding domain only 2016-03-24 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3875 #2 AMADID #016060 IVT DNA binding domain only 2016-03-24 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3875 #2 AMADID #015681 IVT DNA binding domain only 2016-03-24 save search
Clone pTH3875 insert sequence
1    HGDWTFEEQF KQLYELDADP KRKEFLDDLF SFMQKRGTPV NRIPIMAKQV
51   LDLFMLYVLV TEKGGLVEVI NKKLWREITK GLNLPTSITS AAFTLRTQYM
101  KYLYPYECER RGLSSPNELQ AAIDSNRREG RRQSFGGSLF A

DNA Binding Domains (Pfam) for clone 3875
Region 16..126
1    LDADPKRKEF LDDLFSFMQK RGTPVNRIPI MAKQVLDLFM LYVLVTEKGG
51   LVEVINKKLW REITKGLNLP TSITSAAFTL RTQYMKYLYP YECERRGLSS
101  PNELQAAIDS N
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


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