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| -Genomic Data |
Links |
- Protein
- Six6
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- UniPROBE Accession Number
- UP00008
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- Species
- Mus musculus
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- Domain
- Homeobox
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- Uniprot
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Q9QZ28
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- Name and Synonyms
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sine oculis-related homeobox 6 homolog (Drosophila)
Homeobox protein SIX6, Optic homeobox 2, Optx2, Sine oculis homeobox homolog 6, Six9, Six9 protein
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- IHOP
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124638
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- RefSeq
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NP_035514
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- Description
- None Available
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- JASPAR
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None Available
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| -PBM Motif Data for Six6 |
- Primary Motif (Seed-And-Wobble)
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- Primary PWM
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View
Save
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- Top Kmer
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GGGTATCA E.S. 0.497
TGATACCC E.S. 0.497
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- Secondary Motif (Seed-And-Wobble)
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- Secondary PWM
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View
Save
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- Top Kmer
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ATATATCC E.S. 0.478
GGATATAT E.S. 0.478
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Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH2267)
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- PWM
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View
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- Consensus
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NNNVKATNNN
NNNATMBNNN
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Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2267)
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- PWM
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View
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- Consensus
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NNNHHHNNNN
NNNNDDDNNN
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- Downloads
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Download the
zip
of all Six6 PBM files
or view the
downloads directory
for individual files.
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- Link to TFBSshape
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This link will take you to the corresponding entry for Six6
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=8&sourceDB=uniprobe
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| -Six6 Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2267 |
#1 |
AMADID #016060 |
E. coli |
DNA binding domain only |
2016-03-24 |
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| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2267 |
#1 |
AMADID #015681 |
E. coli |
DNA binding domain only |
2016-03-24 |
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- Clone pTH2267 insert sequence
- 1 RVRKKFPLPR TIWDGEQKTH CFKERTRHLL REWYLQDPYP NPSKKRELAQ
51 ATGLTPTQVG NWFKNRRQRD RAAAAKNRLQ QQVLSQGPGR VL
- DNA Binding Domains (Pfam) for clone 2267
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Region 16..72
1 EQKTHCFKER TRHLLREWYL QDPYPNPSKK RELAQATGLT PTQVGNWFKN
51 RRQRDRA
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- References
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Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
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