-Genomic Data Links
Protein
Zfp187
UniPROBE Accession Number
UP00082
Species
Mus musculus
Domain
zf-C2H2
Uniprot
Q5RJ54
Name and Synonyms
zinc finger protein 187
None Available
IHOP
316144
RefSeq
NP_001013808
Description
Mus musculus zinc finger protein 187
JASPAR
N/A
-PBM Motif Data for Zfp187
Primary Motif (Seed-And-Wobble)
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Primary PWM
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Top Kmer
ATG.AC.AAT E.S. 0.498
ATT.GT.CAT E.S. 0.498
Secondary Motif (Seed-And-Wobble)
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Secondary PWM
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Top Kmer
G.CCT.GTCC E.S. 0.490
GGAC.AGG.C E.S. 0.490
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH2626)
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PWM
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Consensus
NNNNNNNDNH
DNHNNNNNNN
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2626)
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PWM
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Consensus
ATGTRCYAAT
ATTRGYACAT
Downloads
Download the zip of all Zfp187 PBM files or view the downloads directory for individual files.
Link to TFBSshape
This link will take you to the corresponding entry for Zfp187 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=82&sourceDB=uniprobe

-Zfp187 Datasets
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH2626 #1 AMADID #016060 E. coli DNA binding domain only 2016-03-24 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH2626 #1 AMADID #015681 E. coli DNA binding domain only 2016-03-24 save search
Clone pTH2626 insert sequence
1    SSVAADHQEI SKDKGHPCQE CGKVFQRSSH LIRHQKIHLG EKPYQCKECG
51   KVFSQNAGLL EHLRIHTGEK PYLCIHCGKN FRQSSHLNRH QKIHSQDEPR
101  ECKECGKTFS RALLLTHHQR VHGRSKRHHC NECGKAFSLT SDLIRHHRIH
151  TGEKPFKCNV CQKAFRLNSH LDQHVRIHNE EKPYKCSECN EAFRQKSGLF
201  QHQRHHHKSK LA

DNA Binding Domains (Pfam) for clone 2626
Region 16..38
1   HPCQECGKVF QRSSHLIRHQ KIH

Region 44..66
1   YQCKECGKVF SQNAGLLEHL RIH

Region 72..94
1   YLCIHCGKNF RQSSHLNRHQ KIH

Region 100..122
1   RECKECGKTF SRALLLTHHQ RVH

Region 128..150
1   HHCNECGKAF SLTSDLIRHH RIH

Region 156..178
1   FKCNVCQKAF RLNSHLDQHV RIH

Region 184..206
1   YKCSECNEAF RQKSGLFQHQ RHH
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


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