-Genomic Data Links
Protein
Sfpi1
UniPROBE Accession Number
UP00085
Species
Mus musculus
Domain
ETS
Name and Synonyms
SFFV proviral integration 1
31 kDa transforming protein, Dis1, Dis-1, PU.1, SFFV proviral integration 1 protein, Sfpi-1, Spi1, Spi-1, Tcfpu1, Tfpu.1, Transcription factor PU.1
Description
Mus musculus SFFV proviral integration 1 (Sfpi1), mRNA
-PBM Motif Data for Sfpi1
Primary Motif (Seed-And-Wobble)
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Primary PWM
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Top Kmer
A.G.GGAAGT E.S. 0.492
ACTTCC.C.T E.S. 0.492
Secondary Motif (Seed-And-Wobble)
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Secondary PWM
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Top Kmer
AATT..GGAA E.S. 0.467
TTCC..AATT E.S. 0.467
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH1034)
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PWM
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Consensus
NNNVGGAAVH
DBTTCCBNNN
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH1034)
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PWM
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Consensus
NNNVGGAAVH
DBTTCCBNNN
Downloads
Download the zip of all Sfpi1 PBM files or view the downloads directory for individual files.
Link to TFBSshape
This link will take you to the corresponding entry for Sfpi1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=85&sourceDB=uniprobe

-Sfpi1 Datasets
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH1034 #1 AMADID #016060 E. coli DNA binding domain only 2016-03-24 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH1034 #1 AMADID #015681 E. coli DNA binding domain only 2016-03-24 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH1034 #2 AMADID #016060 IVT DNA binding domain only 2016-03-24 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH1034 #2 AMADID #015681 IVT DNA binding domain only 2016-03-24 save search
Clone pTH1034 insert sequence
1    EPGPGLLHGE TGSKKKIRLY QFLLDLLRSG DMKDSIWWVD KDKGTFQFSS
51   KHKEALAHRW GIQKGNRKKM TYQKMARALR NYGKTGEVKK VKKKLTYQFS
101  GEVLGRGGLA ERRLPPH

DNA Binding Domains (Pfam) for clone 1034
Region 16..102
1   KIRLYQFLLD LLRSGDMKDS IWWVDKDKGT FQFSSKHKEA LAHRWGIQKG
51  NRKKMTYQKM ARALRNYGKT GEVKKVKKKL TYQFSGE
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


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