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| -Genomic Data |
Links |
- Protein
- Tcf1
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- UniPROBE Accession Number
- UP00089
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- Species
- Mus musculus
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- Domain
- Homeobox
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- Uniprot
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Q66JY7
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- Name and Synonyms
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transcription factor 1
AI323641, hepatocyte nuclear factor 1, Hepatocyte nuclear factor 1-alpha, HNF1, Hnf-1, HNF1[a], Hnf1a, Hnf-1a, HNF-1A, Hnf1alpha, HNF1-alpha, LFB1, Liver-specific transcription factor LF-B1, Tcf-1
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- IHOP
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125377
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- RefSeq
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NP_033353
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- Description
- Mus musculus transcription factor 1 (Tcf1), mRNA.
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- JASPAR
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MA0046
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| -PBM Motif Data for Tcf1 |
- Primary Motif (Seed-And-Wobble)
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- Primary PWM
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View
Save
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- Top Kmer
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GTTAACT.A E.S. 0.490
T.AGTTAAC E.S. 0.490
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- Secondary Motif (Seed-And-Wobble)
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- Secondary PWM
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View
Save
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- Top Kmer
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G.C.GGATTA E.S. 0.475
TAATCC.G.C E.S. 0.475
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-
Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH2666)
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- PWM
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View
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- Consensus
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HTAACYNNNN
NNNNRGTTAD
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Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2666)
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- PWM
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View
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- Consensus
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NHWWAYHNNN
NNNDRTWWDN
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- Downloads
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Download the
zip
of all Tcf1 PBM files
or view the
downloads directory
for individual files.
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- Link to TFBSshape
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This link will take you to the corresponding entry for Tcf1
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=89&sourceDB=uniprobe
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| -Tcf1 Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2666 |
#1 |
AMADID #016060 |
E. coli |
DNA binding domain only |
2016-03-24 |
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| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2666 |
#1 |
AMADID #015681 |
E. coli |
DNA binding domain only |
2016-03-24 |
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| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2666 |
#2 |
AMADID #016060 |
IVT |
DNA binding domain only |
2016-03-24 |
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| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2666 |
#2 |
AMADID #015681 |
IVT |
DNA binding domain only |
2016-03-24 |
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- Clone pTH2666 insert sequence
- 1 GLIEEPTGDE LPTKKGRRNR FKWGPASQQI LFQAYERQKS PSKEERETLV
51 EECNRAECIQ RGVSPSQAQG LGSNLVTEVR VYNWFANRRK EEAFRHKLAM
101 DTYNGPPPGP GPGP
- DNA Binding Domains (Pfam) for clone 2666
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Region 17..98
1 RRNRFKWGPA SQQILFQAYE RQKSPSKEER ETLVEECNRA ECIQRGVSPS
51 QAQGLGSNLV TEVRVYNWFA NRRKEEAFRH KL
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- References
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Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
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