-Genomic Data Links
Protein
Elf3
UniPROBE Accession Number
UP00090
Species
Mus musculus
Domain
AT_hook, ETS
Name and Synonyms
E74-like factor 3
Epithelial-restricted with serine box, Epithelium-restricted Ets protein ESX, Epithelium-specific Ets transcription factor 1, Ert, ESE-1, Esx, ESX, ETS-related transcription factor Elf-3, jen, Jen
Description
ETS-related transcription factor Elf-3 isoform 1
-PBM Motif Data for Elf3
Primary Motif (Seed-And-Wobble)
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Primary PWM
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Top Kmer
A..AGGAAAT E.S. 0.492
ATTTCCT..T E.S. 0.492
Secondary Motif (Seed-And-Wobble)
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Secondary PWM
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Top Kmer
T..AAAAAAA E.S. 0.455
TTTTTTT..A E.S. 0.455
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH3876)
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PWM
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Consensus
NNNNRDAWVN
NBWTHYNNNN
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH3876)
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PWM
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Consensus
NNVVGGAARN
NYTTCCBBNN
Downloads
Download the zip of all Elf3 PBM files or view the downloads directory for individual files.
Link to TFBSshape
This link will take you to the corresponding entry for Elf3 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=90&sourceDB=uniprobe

-Elf3 Datasets
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3876 #1 AMADID #016060 E. coli DNA binding domain only 2016-03-24 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3876 #1 AMADID #015681 E. coli DNA binding domain only 2016-03-24 save search
Clone pTH3876 insert sequence
1    RDGFPDYKKG EPKHGKRKRG RPRKLSKEYW DCLEGKKSKH APRGTHLWEF
51   IRDILIHPEL NEGLMKWENR HEGVFKFLRS EAVAQLWGQK KKNSNMTYEK
101  LSRAMRYYYK REILERVDGR RLVYKFGKNS SGWKEEEVGE SRN

DNA Binding Domains (Pfam) for clone 3876
Region 44..129
1   GTHLWEFIRD ILIHPELNEG LMKWENRHEG VFKFLRSEAV AQLWGQKKKN
51  SNMTYEKLSR AMRYYYKREI LERVDGRRLV YKFGKN
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


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