Protein Details

-Genomic Data for VND3				Links
Protein VND3	UniPROBE Accession Number UP00579	Species Arabidopsis thaliana	Domain NAC	Swiss-Prot Q9FH59
Name and Synonyms Name: NAC domain containing protein. Synonyms:ANAC105, Arabidopsis NAC domain containing protein 105, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 105, K1L20_8, K1L20.8, NAC domain containing protein 105, NAC DOMAIN CONTAINING PROTEIN 105, VASCULAR-RELATED NAC-DOMAIN 3, VND3				IHOP 22033
				NCBI Acc. NM_126028
Description Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, ge				JASPAR None Available

-PBM Motif Data for VND3
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)				PWM Save
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)				Top Kmer CACGGCAC E.S. 0.493 GTGCCGTG E.S. 0.493
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)				PWM Save
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)				Top Kmer ACACG.AAC E.S. 0.489 GTT.CGTGT E.S. 0.489
Downloads Download the zip of all VND3 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.

-VND3 Datasets
Clone	Clone Type	Last Modified	Save	View
VND3	DNA binding domain only	2016-03-24
VND3 Insert Sequence `1 MMKVDQDYSC SIPPGFRFHP TDEELVGYYL KKKIASQRID LDVIREIDLY 51 KIEPWDLQER CRIGYEEQTE WYFFSHRDKK YPTGTRTNRA TVAGFWKATG 101 RDKAVYLNSK LIGMRKTLVF YRGRAPNGQK SDWIIHEYYS LESHQNSPPQ 151 EEGWVVCRAF KKRTT`
References `Data are analyzed by array designs with AMADID #s 034149, 034150 in Lindemose et al, Nucleic Acids Res. 2014`