-Genomic Data for VND7 Links
Protein
VND7
UniPROBE Accession Number
UP00580
Species
Arabidopsis thaliana
Domain
NAC
Name and Synonyms
Name: vascular related NAC-domain protein 7.
Synonyms:ANAC030, Arabidopsis NAC domain containing protein 30, ARABIDOPSIS NAC-DOMAIN PROTEIN 030, F17M19_8, F17M19.8, vascular related NAC-domain protein 7, VASCULAR RELATED NAC-DOMAIN PROTEIN 7
Description
Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (e.g. genes involved in secondary wall biosynthesis, cell wall modification such as xylan accumulation, and programmed cell death). Involved in xylem formation in roots and shoots, especially regulating pro
-PBM Motif Data for VND7
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)
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PWM
Save
Top Kmer
ACACG.AAC E.S. 0.491
GTT.CGTGT E.S. 0.491
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)
Image Not Available.  We apologize for the inconvenience.
PWM
Save
Top Kmer
ACACG.AAC E.S. 0.492
GTT.CGTGT E.S. 0.492
Downloads
Download the zip of all VND7 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
-VND7 Datasets
Clone Clone Type Last Modified Save View
VND7 DNA binding domain only 2016-03-24 search save
VND7 Insert Sequence
1    MDNIMQSSMP PGFRFHPTEE ELVGYYLDRK INSMKSALDV IVEIDLYKME
51   PWDIQARCKL GYEEQNEWYF FSHKDRKYPT GTRTNRATAA GFWKATGRDK
101  AVLSKNSVIG MRKTLVYYKG RAPNGRKSDW IMHEYRLQNS ELAPVQEEGW
151  VVCRAFRKPI PNQ



References
Data are analyzed by array designs with AMADID #s 034149, 034150 in Lindemose et al, Nucleic Acids Res. 2014


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