-Genomic Data for ISX Links
Protein
ISX
UniPROBE Accession Number
UP00598
Species
Homo sapiens
Domain
Homeobox
Swiss-Prot
Q2M1V0
Name and Synonyms
Name: intestine-specific homeobox.
Synonyms:DKFZp781N2395, Intestine-specific homeobox, MGC138417, Pix-1, RAX-like homeobox, RAXLX
IHOP
104877
Description
Transcription factor that regulates gene expression in intestine. May participate in vitamin A metabolism most likely by regulating BCO1 expression in the intestine.
NCBI RefSeq
NP_001290437
ISX DNA binding domain
1   RRVRTTFTTE QLQELEKLFH FTHYPDIHVR SQLASRINLP EARVQIWFQN
51  QRAKWRK
JASPAR
None Available
-PBM Motif Data for ISX_REF_R1
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)
Image Not Available. We apologize for the inconvenience.
PWM
Save
Top Kmer
ACCAATTA E.S. 0.495
TAATTGGT E.S. 0.495
Downloads
Download the zip of all ISX_REF PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
-PBM Motif Data for ISX_REF_R2
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)
Image Not Available. We apologize for the inconvenience.
PWM
Save
Top Kmer
CTAATTAG E.S. 0.496
CTAATTAG E.S. 0.496
Downloads
Download the zip of all ISX_REF PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
-PBM Motif Data for ISX_R83Q_R1
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)
Image Not Available. We apologize for the inconvenience.
PWM
Save
Top Kmer
TTAATTAA E.S. 0.499
TTAATTAA E.S. 0.499
Downloads
Download the zip of all ISX_R83Q PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
-PBM Motif Data for ISX_R83Q_R2
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)
Image Not Available. We apologize for the inconvenience.
PWM
Save
Top Kmer
CTAATTAA E.S. 0.498
TTAATTAG E.S. 0.498
Downloads
Download the zip of all ISX_R83Q PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Download Data for ISX (all alleles)
Downloads
Download the zip of all ISX PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
-ISX Datasets
Clone Clone Type Last Modified Save View
ISX_REF DNA binding domain only search save
ISX_REF Insert Sequence
1   LEKPPKDQPQ EGRKSKRRVR TTFTTEQLHE LEKIFHFTHY PDVHIRSQLA
51  ARINLPEARV QIWFQNQRAK WRKQEKIGNL GAPQQLSEAS


ISX_R83Q DNA binding domain only search save
ISX_R83Q Insert Sequence
1   LEKPPKDQPQ EGRKSKQRVR TTFTTEQLHE LEKIFHFTHY PDVHIRSQLA
51  ARINLPEARV QIWFQNQRAK WRKQEKIGNL GAPQQLSEAS


References
Data are analyzed by array designs with AMADID #s 030236, 015681 in Barrera et al., Science 2016


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