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| -Genomic Data for Rap1 |
Links |
- Protein
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- UniPROBE Accession Number
- UP00398
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- Species
- Saccharomyces cerevisiae
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- Domain
- Myb
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- Swiss-Prot
- P11938
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- Name and Synonyms
- Name: None Available.
Synonyms:"DNA-binding protein RAP1, GRF1, N1310, Repressor/activator site-binding protein, SBF-E, TBA1, TUF, TUF1, YNL216W"
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- IHOP
- 35577
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- NCBI RefSeq
- NP_014183
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- Description
- "DNA-binding protein involved in either activation or repression of transcription, depending on binding site context; also binds telomere sequences and plays a role in telomeric position effect (sil..."
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- JASPAR
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None Available
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| -PBM Motif Data for Rap1 |
- PBM-Derived DNA Binding Site Motif
(Seed-And-Wobble)
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- PWM
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Save
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- Top Kmer
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CCC..ACACC E.S. 0.497
GGTGT..GGG E.S. 0.497
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- PBM-Derived DNA Binding Site Motif
(BEEML-PBM) (AMADID # 015681)
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- PWM
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Save
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- Consensus
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ACCCATACAC
GTGTATGGGT
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- PBM-Derived DNA Binding Site Motif
(BEEML-PBM) (AMADID # 016060)
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- PWM
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Save
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- Consensus
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CCCATACACC
GGTGTATGGG
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- Downloads
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Download the
zip
of all Rap1 PBM files
or view the downloads directory for individual files.
Please note that the files which include probe sequence data are protected by an academic research use license,
which can be viewed here.
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- Link to TFBSshape
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This link will take you to the corresponding entry for Rap1
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=398&sourceDB=uniprobe
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| -Rap1 Datasets |
| Gene |
Clone Type |
Last Modified |
Save |
View |
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Rap1 |
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2016-03-24 |
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- Rap1 Insert Sequence
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1 MVQQTNNAEN TEALLAGESS DSGAGLELGI ASSPTPGSTA STGGKADDPS
51 WCKTPSGHIK RPMNAFMVWS QIERRKIMEQ SPDMHNAEIS KRLGKRWKLL
101 KDSDKIPFIR EAERLRLKHM ADYPDYKYRP RKKVKSGNAN SSSSAAASSK
151 PGEKGDKVGG SGGGGHGGGG GGGSSNAGGG GGGASGGGAN SKPAQKKSCG
201 SKVAGGAGGG VSKPHAKLIL AGGGGGGKAA AAAAASFAAE QAGAAALLPL
251 GAAADHHSLY KARTPSASAS ASSAASASAA LAAPGKHLAE KKVKRVYLFG
301 GLGTSSSPVG GVGAGADPSD PLGLYEEEGA GCSPDAPSLS
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- References
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Data are analyzed by array design with AMADID # in Berger et al., Nat Biotech 2006
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