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| -Genomic Data for NSY-7 |
Links |
- Protein
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- UniPROBE Accession Number
- UP00402
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- Species
- C. elegans
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- Domain
- Distant similarity to homeodomain
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- Swiss-Prot
- Q4PIU8
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- Name and Synonyms
- Name: NSY-7.
Synonyms:C18F3.4, Q4PIU8_CAEEL
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- IHOP
- 1468486
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- NCBI Acc.
- None Available
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- Description
- Putative uncharacterized protein
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- JASPAR
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None Available
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| -PBM Motif Data for NSY-7 |
- PBM-Derived DNA Binding Site Motif
(Seed-And-Wobble)
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- PWM
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Save
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- Top Kmer
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...ACCTTAAC... E.S. 0.497
...GTTAAGGT... E.S. 0.497
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- PBM-Derived DNA Binding Site Motif
(BEEML-PBM)
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- PWM
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Save
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- Consensus
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NNNCCTTADN
NHTAAGGNNN
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- Downloads
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Download the
zip
of all NSY-7 PBM files
or view the downloads directory for individual files.
Please note that the files which include probe sequence data are protected by an academic research use license,
which can be viewed here.
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- Link to TFBSshape
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This link will take you to the corresponding entry for NSY-7
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=402&sourceDB=uniprobe
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| -NSY-7 Datasets |
| Gene |
Clone Type |
Last Modified |
Save |
View |
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NSY-7 |
Full length clone |
2016-03-24 |
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- NSY-7 Insert Sequence
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1 MSSDTKYKYA VVRIPETSVV DFFSLIVAKG YSDVSFVASL SQCNLRDDPN
51 DDQPTTSSNS VKESINDDES NSENNKLSPP RRQSNPHSSL PAISSSTVKN
101 EPTDSWTPSA LSNDPTPDLL SATVPAELLT NLFAKTKSTE PKPQQLFGFQ
151 ASGVDFDLSN NEWHENLRLP NGNGTEKYHP YGGNSKNDSP LQTRMKGWQR
201 EYIKEVIKDS HYPTEEELRD IEQKCDLSRK QILRFIAKRL TNPNRKPRVN
251 HHDEKRKEQE ERDSLADPDD DMINDNEAVT NLHHILNSLQ ETTA
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- References
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Data are analyzed by array design with AMADID # 016060 in Lesch et al., Genes Dev 2009
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