-Genomic Data Links
Protein
Pou3f4
UniPROBE Accession Number
UP00105
Species
Mus musculus
Domain
Homeobox, POU
Uniprot
P62515
Name and Synonyms
POU domain, class 3, transcription factor 4
Brain-4, Brain-specific homeobox/POU domain protein 4, Brn4, Brn-4, BRN-4, Otf9, Slf
IHOP
123681
Description
None Available
RefSeq
NP_032927
Pou3f4 DNA binding domain
1   RKKRTSIEVS VKGVLETHFL KCPKPAAQEI SSLADSLQLE KEVVRVWFCN
51  RRQKEKR
JASPAR
None Available
-PBM Motif Data for Pou3f4
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
AATTAATT (E.S. 0.49686)
AATTAATT (E.S. 0.49686)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NWWATKHNNN
NNNDMATWWN
Downloads
Download the zip of all Pou3f4 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Pou3f4 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=105&sourceDB=uniprobe
-Pou3f4 Datasets
Clone ID Expression Expression Method Save View
pTH3773 #1 E. coli save search
Clone pTH3773 insert sequence
1    DHGELGSHHC QDHSDEETPT SDELEQFAKQ FKQRRIKLGF TQADVGLALG
51   TLYGNVFSQT TICRFEALQL SFKNMCKLKP LLNKWLEEAD SSTGSPTSID
101  KIAAQGRKRK KRTSIEVSVK GVLETHFLKC PKPAAQEISS LADSLQLEKE
151  VVRVWFCNRR QKEKRMTPPG DQQPHEVYSH TVKTD
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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