Downloads
This page hosts bulk downloads for all transcription factors in the UniPROBE database, organized by publication, and for the SQL tables holding PBM data or factor annotations. These files can be quite large, so please be prepared for significant download times. Please note that any files which contain PBM probe sequences are protected by an academic research use license, which will require confirmation prior to file download. Additionally, the various papers and datasets covered in this database have employed a variety of universal array designs created using various deBruijn sequences. Users interested in the 60-mer probe sequences should download the probe sequences associated with the particular datasets or papers of interest.
If you wish to download individual files for certain transcriptions factors, you can find them most easily using the browse page, which provides an interface for text-based searches. The site's public directory index also makes all database files easily accessible.
All Data
Every download in this section contains a file for each protein in the database.
- Ungapped 8-mer Data
-
The enrichment scores of the contiguous 8-mers as calculated for each protein.
- PWMs
-
The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.
- Normalized Probe Data (60-mer signal intensities and sequences)
-
The median signal intensity values and corresponding nucleotide probe sequences.
- Raw Probe Data
-
Text files containing the unprocessed output from the PBM array runs.
By Publication:
Alibes et al., NAR 2010
- All Data
-
This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.
- All Ungapped 8-mer Data
-
The enrichment scores associated with each contiguous 8-mer for each factor.
Separate files for each factor: Download
- PWMs
-
The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.
Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download
- Motif Logos
-
The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.
- 60-mer Probe Sequences
-
Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)
Badis et al., Science 2009
- All Data
-
This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.
- All Ungapped 8-mer Data
-
The enrichment scores associated with each contiguous 8-mer for each factor.
Separate files for each factor: Download
- PWMs
-
The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.
Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download
- Motif Logos
-
The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.
- 60-mer Probe Sequences
-
Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)
Barrera et al., Science 2016
- All Data
-
This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.
- All Ungapped 8-mer Data
-
The enrichment scores associated with each contiguous 8-mer for each factor.
Separate files for each factor: Download
- Top Gapped 8-mer Data
-
Enrichment scores, median signal intensities, and z-scores for the gapped 8-mers with enrichment scores above a 0.25 threshold.
- PWMs
-
The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.
Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download
- Motif Logos
-
The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.
- 60-mer Probe Sequences
-
Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)
Berger et al., Nat Biotech 2006
- All Data
-
This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.
- All Ungapped 8-mer Data
-
The enrichment scores associated with each contiguous 8-mer for each factor.
Separate files for each factor: Download
- PWMs
-
The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.
Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download
- Motif Logos
-
The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.
- 60-mer Probe Sequences
-
Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)
Berger et al., Cell 2008
- All Data
-
This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.
- All Ungapped 8-mer Data
-
The enrichment scores associated with each contiguous 8-mer for each factor.
Separate files for each factor: Download
- PWMs
-
The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.
Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download
- Motif Logos
-
The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.
- 60-mer Probe Sequences
-
Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)
Busser et al., Development 2012
- All Data
-
This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.
- All Ungapped 8-mer Data
-
The enrichment scores associated with each contiguous 8-mer for each factor.
Separate files for each factor: Download
- Top Gapped 8-mer Data
-
Enrichment scores, median signal intensities, and z-scores for the gapped 8-mers with enrichment scores above a 0.25 threshold.
- PWMs
-
The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.
Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download
- Motif Logos
-
The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.
- 60-mer Probe Sequences
-
Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)
Busser et al., PNAS 2012
- All Data
-
This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.
- All Ungapped 8-mer Data
-
The enrichment scores associated with each contiguous 8-mer for each factor.
Separate files for each factor: Download
- Top Gapped 8-mer Data
-
Enrichment scores, median signal intensities, and z-scores for the gapped 8-mers with enrichment scores above a 0.25 threshold.
- PWMs
-
The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.
Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download
- Motif Logos
-
The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.
- 60-mer Probe Sequences
-
Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)
Campbell et al., PLoS Pathog 2010
- All Data
-
This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.
- All Ungapped 8-mer Data
-
The enrichment scores associated with each contiguous 8-mer for each factor.
Separate files for each factor: Download
- Top Gapped 8-mer Data
-
Enrichment scores, median signal intensities, and z-scores for the gapped 8-mers with enrichment scores above a 0.25 threshold.
- PWMs
-
The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.
Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download
- Motif Logos
-
The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.
- 60-mer Probe Sequences
-
Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)
Cheatle Jarvela et al., Mol Biol Evol 2014
- All Data
-
This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.
- All Ungapped 8-mer Data
-
The enrichment scores associated with each contiguous 8-mer for each factor.
Separate files for each factor: Download
- Top Gapped 8-mer Data
-
Enrichment scores, median signal intensities, and z-scores for the gapped 8-mers with enrichment scores above a 0.25 threshold.
- PWMs
-
The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.
Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download
- Motif Logos
-
The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.
- 60-mer Probe Sequences
-
Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)
Del Bianco et al., PLoS ONE 2010
- All Data
-
This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.
- All Ungapped 8-mer Data
-
The enrichment scores associated with each contiguous 8-mer for each factor.
Separate files for each factor: Download
- Top Gapped 8-mer Data
-
Enrichment scores, median signal intensities, and z-scores for the gapped 8-mers with enrichment scores above a 0.25 threshold.
- PWMs
-
The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.
Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download
- Motif Logos
-
The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.
- 60-mer Probe Sequences
-
Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)
De Masi et al., NAR 2011
- All Data
-
This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.
- All Ungapped 8-mer Data
-
The enrichment scores associated with each contiguous 8-mer for each factor.
Separate files for each factor: Download
- Top Gapped 8-mer Data
-
Enrichment scores, median signal intensities, and z-scores for the gapped 8-mers with enrichment scores above a 0.25 threshold.
- PWMs
-
The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.
Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download
- Motif Logos
-
The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.
- 60-mer Probe Sequences
-
Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)
De Silva et al., PNAS 2008
- All Data
-
This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.
- All Ungapped 8-mer Data
-
The enrichment scores associated with each contiguous 8-mer for each factor.
Separate files for each factor: Download
- PWMs
-
The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.
Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download
- Motif Logos
-
The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.
- 60-mer Probe Sequences
-
Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)
Gordan et al., Gen. Bio. 2011
- All Data
-
This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.
- All Ungapped 8-mer Data
-
The enrichment scores associated with each contiguous 8-mer for each factor.
Separate files for each factor: Download
- Top Gapped 8-mer Data
-
Enrichment scores, median signal intensities, and z-scores for the gapped 8-mers with enrichment scores above a 0.25 threshold.
- PWMs
-
The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.
Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download
- Motif Logos
-
The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.
- 60-mer Probe Sequences
-
Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)
Grove et al., Cell 2009
- All Data
-
This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.
- All Ungapped 8-mer Data
-
The enrichment scores associated with each contiguous 8-mer for each factor.
Separate files for each factor: Download
- PWMs
-
The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.
Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download
- Motif Logos
-
The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.
- 60-mer Probe Sequences
-
Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)
Helfer et al., Curr Biol 2011
- All Data
-
This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.
- All Ungapped 8-mer Data
-
The enrichment scores associated with each contiguous 8-mer for each factor.
Separate files for each factor: Download
- PWMs
-
The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.
Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download
- Motif Logos
-
The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.
- 60-mer Probe Sequences
-
Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)
Li et al., Nature 2017
- All Data
-
This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.
- All Ungapped 8-mer Data
-
The enrichment scores associated with each contiguous 8-mer for each factor.
Separate files for each factor: Download
- PWMs
-
The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.
Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download
- Motif Logos
-
The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.
- 60-mer Probe Sequences
-
Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)
Lai et al. 2020
- All Data
-
This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.
- All Ungapped 8-mer Data
-
The enrichment scores associated with each contiguous 8-mer for each factor.
Separate files for each factor: Download
- PWMs
-
The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.
Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download
- Motif Logos
-
The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.
- 60-mer Probe Sequences
-
Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)
Lesch et al., Genes Dev 2009
- All Data
-
This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.
- All Ungapped 8-mer Data
-
The enrichment scores associated with each contiguous 8-mer for each factor.
Separate files for each factor: Download
- PWMs
-
The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.
Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download
- Motif Logos
-
The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.
- 60-mer Probe Sequences
-
Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)
Lehti-Shiu et al., PP 2015
- All Data
-
This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.
- All Ungapped 8-mer Data
-
The enrichment scores associated with each contiguous 8-mer for each factor.
Separate files for each factor: Download
- Top Gapped 8-mer Data
-
Enrichment scores, median signal intensities, and z-scores for the gapped 8-mers with enrichment scores above a 0.25 threshold.
- PWMs
-
The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.
Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download
- Motif Logos
-
The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.
- 60-mer Probe Sequences
-
Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)
Lindemose et al, Nucleic Acids Res. 2014
- All Data
-
This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.
- All Ungapped 8-mer Data
-
The enrichment scores associated with each contiguous 8-mer for each factor.
Separate files for each factor: Download
- Top Gapped 8-mer Data
-
Enrichment scores, median signal intensities, and z-scores for the gapped 8-mers with enrichment scores above a 0.25 threshold.
- PWMs
-
The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.
Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download
- Motif Logos
-
The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.
- 60-mer Probe Sequences
-
Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)
Liu et al., Cell 2018
- All Data
-
This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.
- All Ungapped 8-mer Data
-
The enrichment scores associated with each contiguous 8-mer for each factor.
Separate files for each factor: Download
- Top Gapped 8-mer Data
-
Enrichment scores, median signal intensities, and z-scores for the gapped 8-mers with enrichment scores above a 0.25 threshold.
- PWMs
-
The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.
Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download
- Motif Logos
-
The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.
- 60-mer Probe Sequences
-
Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)
Liu et al., eLife 2018
- All Data
-
This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.
- All Ungapped 8-mer Data
-
The enrichment scores associated with each contiguous 8-mer for each factor.
Separate files for each factor: Download
- Top Gapped 8-mer Data
-
Enrichment scores, median signal intensities, and z-scores for the gapped 8-mers with enrichment scores above a 0.25 threshold.
- PWMs
-
The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.
Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download
- Motif Logos
-
The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.
- 60-mer Probe Sequences
-
Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)
Mariani et al., Cell Systems 2017
- All Data
-
This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.
- All Ungapped 8-mer Data
-
The enrichment scores associated with each contiguous 8-mer for each factor.
Separate files for each factor: Download
- Top Gapped 8-mer Data
-
Enrichment scores, median signal intensities, and z-scores for the gapped 8-mers with enrichment scores above a 0.25 threshold.
- PWMs
-
The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.
Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download
- Motif Logos
-
The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.
- 60-mer Probe Sequences
-
Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)
Mizeracka et al. 2019
- All Data
-
This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.
- All Ungapped 8-mer Data
-
The enrichment scores associated with each contiguous 8-mer for each factor.
Separate files for each factor: Download
- PWMs
-
The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.
Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download
- Motif Logos
-
The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.
- 60-mer Probe Sequences
-
Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)
Nakagawa et al., PNAS 2013
- All Data
-
This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.
- All Ungapped 8-mer Data
-
The enrichment scores associated with each contiguous 8-mer for each factor.
Separate files for each factor: Download
- Top Gapped 8-mer Data
-
Enrichment scores, median signal intensities, and z-scores for the gapped 8-mers with enrichment scores above a 0.25 threshold.
- PWMs
-
The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.
Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download
- Motif Logos
-
The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.
- 60-mer Probe Sequences
-
Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)
Peterson et al., Genes Dev 2012
- All Data
-
This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.
- All Ungapped 8-mer Data
-
The enrichment scores associated with each contiguous 8-mer for each factor.
Separate files for each factor: Download
- Top Gapped 8-mer Data
-
Enrichment scores, median signal intensities, and z-scores for the gapped 8-mers with enrichment scores above a 0.25 threshold.
- PWMs
-
The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.
Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download
- Motif Logos
-
The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.
- 60-mer Probe Sequences
-
Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)
Pompeani et al., Mol Microbiol 2008
- All Data
-
This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.
- All Ungapped 8-mer Data
-
The enrichment scores associated with each contiguous 8-mer for each factor.
Separate files for each factor: Download
- PWMs
-
The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.
Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download
- Motif Logos
-
The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.
- 60-mer Probe Sequences
-
Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)
Radke et al., PNAS 2013
- All Data
-
This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.
- All Ungapped 8-mer Data
-
The enrichment scores associated with each contiguous 8-mer for each factor.
Separate files for each factor: Download
- PWMs
-
The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.
Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download
- Motif Logos
-
The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.
- 60-mer Probe Sequences
-
Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)
Rogers et al., Mol Cell 2019
- All Data
-
This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.
- All Ungapped 8-mer Data
-
The enrichment scores associated with each contiguous 8-mer for each factor.
Separate files for each factor: Download
- Top Gapped 8-mer Data
-
Enrichment scores, median signal intensities, and z-scores for the gapped 8-mers with enrichment scores above a 0.25 threshold.
- PWMs
-
The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.
Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download
- Motif Logos
-
The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.
- 60-mer Probe Sequences
-
Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)
Santos et al., Cell Host Microbe 2017
- All Data
-
This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.
- All Ungapped 8-mer Data
-
The enrichment scores associated with each contiguous 8-mer for each factor.
Separate files for each factor: Download
- Top Gapped 8-mer Data
-
Enrichment scores, median signal intensities, and z-scores for the gapped 8-mers with enrichment scores above a 0.25 threshold.
- PWMs
-
The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.
Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download
- Motif Logos
-
The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.
- 60-mer Probe Sequences
-
Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)
Scharer et al., Cancer Res 2009
- All Data
-
This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.
- All Ungapped 8-mer Data
-
The enrichment scores associated with each contiguous 8-mer for each factor.
Separate files for each factor: Download
- PWMs
-
The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.
Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download
- Motif Logos
-
The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.
- 60-mer Probe Sequences
-
Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)
Shokri et al., Cell Reports 2019
- All Data
-
This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.
- All Ungapped 8-mer Data
-
The enrichment scores associated with each contiguous 8-mer for each factor.
Separate files for each factor: Download
- Top Gapped 8-mer Data
-
Enrichment scores, median signal intensities, and z-scores for the gapped 8-mers with enrichment scores above a 0.25 threshold.
- PWMs
-
The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.
Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download
- Motif Logos
-
The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.
- 60-mer Probe Sequences
-
Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)
Soruco et al., Genes Dev 2013
- All Data
-
This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.
- All Ungapped 8-mer Data
-
The enrichment scores associated with each contiguous 8-mer for each factor.
Separate files for each factor: Download
- Top Gapped 8-mer Data
-
Enrichment scores, median signal intensities, and z-scores for the gapped 8-mers with enrichment scores above a 0.25 threshold.
- PWMs
-
The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.
Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download
- Motif Logos
-
The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.
- 60-mer Probe Sequences
-
Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)
Stielow et al., Science Advances 2021
- All Data
-
This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.
- All Ungapped 8-mer Data
-
The enrichment scores associated with each contiguous 8-mer for each factor.
Separate files for each factor: Download
- PWMs
-
The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.
Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download
- Motif Logos
-
The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.
- 60-mer Probe Sequences
-
Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)
Wei et al., EMBO J 2010
- All Data
-
This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.
- All Ungapped 8-mer Data
-
The enrichment scores associated with each contiguous 8-mer for each factor.
Separate files for each factor: Download
- Top Gapped 8-mer Data
-
Enrichment scores, median signal intensities, and z-scores for the gapped 8-mers with enrichment scores above a 0.25 threshold.
- PWMs
-
The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.
Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download
- Motif Logos
-
The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.
- 60-mer Probe Sequences
-
Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)
Zhu et al., Genome Res 2009
- All Data
-
This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.
- All Ungapped 8-mer Data
-
The enrichment scores associated with each contiguous 8-mer for each factor.
Separate files for each factor: Download
- Top Gapped 8-mer Data
-
Enrichment scores, median signal intensities, and z-scores for the gapped 8-mers with enrichment scores above a 0.25 threshold.
- PWMs
-
The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.
Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download
- Motif Logos
-
The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.
- 60-mer Probe Sequences
-
Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)
SQL Data: (Download)
Note: if you want to make use of the database SQL dump, you may need our functions to map k-mers uniquely to and from integers, which is the form in which they are stored in the database. This file will provide you with the algorithm in the form of two different language implementations. Here is a UML diagram illustrating the relationships between the various tables in the database.
