Downloads

This page hosts bulk downloads for all transcription factors in the UniPROBE database, organized by publication, and for the SQL tables holding PBM data or factor annotations. These files can be quite large, so please be prepared for significant download times. Please note that any files which contain PBM probe sequences are protected by an academic research use license, which will require confirmation prior to file download. Additionally, the various papers and datasets covered in this database have employed a variety of universal array designs created using various deBruijn sequences. Users interested in the 60-mer probe sequences should download the probe sequences associated with the particular datasets or papers of interest.

If you wish to download individual files for certain transcriptions factors, you can find them most easily using the browse page, which provides an interface for text-based searches. The site's public directory index also makes all database files easily accessible.

All Data

Every download in this section contains a file for each protein in the database.

Ungapped 8-mer Data

The enrichment scores of the contiguous 8-mers as calculated for each protein.


Download

PWMs

The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.


Download

Normalized Probe Data (60-mer signal intensities and sequences)

The median signal intensity values and corresponding nucleotide probe sequences.


Download

Raw Probe Data

Text files containing the unprocessed output from the PBM array runs.


Download

By Publication:

Liu et al., eLife 2018

All Data

This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.


Download

All Ungapped 8-mer Data

The enrichment scores associated with each contiguous 8-mer for each factor.


Separate files for each factor: Download

Top Gapped 8-mer Data

Enrichment scores, median signal intensities, and z-scores for the gapped 8-mers with enrichment scores above a 0.25 threshold.


Download

PWMs

The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.


Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download

Motif Logos

The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.


Download

60-mer Probe Sequences

Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)


Download

Liu et al., Cell 2018

All Data

This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.


Download

All Ungapped 8-mer Data

The enrichment scores associated with each contiguous 8-mer for each factor.


Separate files for each factor: Download

Top Gapped 8-mer Data

Enrichment scores, median signal intensities, and z-scores for the gapped 8-mers with enrichment scores above a 0.25 threshold.


Download

PWMs

The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.


Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download

Motif Logos

The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.


Download

60-mer Probe Sequences

Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)


Download

Mariani et al., Cell Systems 2017

All Data

This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.


Download

All Ungapped 8-mer Data

The enrichment scores associated with each contiguous 8-mer for each factor.


Separate files for each factor: Download

Top Gapped 8-mer Data

Enrichment scores, median signal intensities, and z-scores for the gapped 8-mers with enrichment scores above a 0.25 threshold.


Download

PWMs

The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.


Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download

Motif Logos

The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.


Download

60-mer Probe Sequences

Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)


Download

Santos et al., Cell Host Microbe 2017

All Data

This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.


Download

All Ungapped 8-mer Data

The enrichment scores associated with each contiguous 8-mer for each factor.


Separate files for each factor: Download

Top Gapped 8-mer Data

Enrichment scores, median signal intensities, and z-scores for the gapped 8-mers with enrichment scores above a 0.25 threshold.


Download

PWMs

The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.


Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download

Motif Logos

The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.


Download

60-mer Probe Sequences

Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)


Download

Li et al., Nature 2017

All Data

This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.


Download

All Ungapped 8-mer Data

The enrichment scores associated with each contiguous 8-mer for each factor.


Separate files for each factor: Download

PWMs

The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.


Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download

Motif Logos

The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.


Download

60-mer Probe Sequences

Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)


Download

Barrera et al., Science 2016

All Data

This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.


Download

All Ungapped 8-mer Data

The enrichment scores associated with each contiguous 8-mer for each factor.


Separate files for each factor: Download

Top Gapped 8-mer Data

Enrichment scores, median signal intensities, and z-scores for the gapped 8-mers with enrichment scores above a 0.25 threshold.


Download

PWMs

The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.


Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download

Motif Logos

The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.


Download

60-mer Probe Sequences

Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)


Download

Radke et al., PNAS 2013

All Data

This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.


Download

All Ungapped 8-mer Data

The enrichment scores associated with each contiguous 8-mer for each factor.


Separate files for each factor: Download

PWMs

The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.


Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download

Motif Logos

The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.


Download

60-mer Probe Sequences

Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)


Download

Lindemose et al, Nucleic Acids Res. 2014

All Data

This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.


Download

All Ungapped 8-mer Data

The enrichment scores associated with each contiguous 8-mer for each factor.


Separate files for each factor: Download

Top Gapped 8-mer Data

Enrichment scores, median signal intensities, and z-scores for the gapped 8-mers with enrichment scores above a 0.25 threshold.


Download

PWMs

The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.


Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download

Motif Logos

The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.


Download

60-mer Probe Sequences

Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)


Download

Lehti-Shiu et al., PP 2015

All Data

This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.


Download

All Ungapped 8-mer Data

The enrichment scores associated with each contiguous 8-mer for each factor.


Separate files for each factor: Download

Top Gapped 8-mer Data

Enrichment scores, median signal intensities, and z-scores for the gapped 8-mers with enrichment scores above a 0.25 threshold.


Download

PWMs

The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.


Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download

Motif Logos

The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.


Download

60-mer Probe Sequences

Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)


Download

Helfer et al., Curr Biol 2011

All Data

This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.


Download

All Ungapped 8-mer Data

The enrichment scores associated with each contiguous 8-mer for each factor.


Separate files for each factor: Download

PWMs

The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.


Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download

Motif Logos

The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.


Download

60-mer Probe Sequences

Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)


Download

De Masi et al., NAR 2011

All Data

This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.


Download

All Ungapped 8-mer Data

The enrichment scores associated with each contiguous 8-mer for each factor.


Separate files for each factor: Download

Top Gapped 8-mer Data

Enrichment scores, median signal intensities, and z-scores for the gapped 8-mers with enrichment scores above a 0.25 threshold.


Download

PWMs

The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.


Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download

Motif Logos

The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.


Download

60-mer Probe Sequences

Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)


Download

Peterson et al., Genes Dev 2012

All Data

This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.


Download

All Ungapped 8-mer Data

The enrichment scores associated with each contiguous 8-mer for each factor.


Separate files for each factor: Download

Top Gapped 8-mer Data

Enrichment scores, median signal intensities, and z-scores for the gapped 8-mers with enrichment scores above a 0.25 threshold.


Download

PWMs

The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.


Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download

Motif Logos

The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.


Download

60-mer Probe Sequences

Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)


Download

Busser et al., PNAS 2012

All Data

This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.


Download

All Ungapped 8-mer Data

The enrichment scores associated with each contiguous 8-mer for each factor.


Separate files for each factor: Download

Top Gapped 8-mer Data

Enrichment scores, median signal intensities, and z-scores for the gapped 8-mers with enrichment scores above a 0.25 threshold.


Download

PWMs

The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.


Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download

Motif Logos

The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.


Download

60-mer Probe Sequences

Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)


Download

Soruco et al., Genes Dev 2013

All Data

This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.


Download

All Ungapped 8-mer Data

The enrichment scores associated with each contiguous 8-mer for each factor.


Separate files for each factor: Download

Top Gapped 8-mer Data

Enrichment scores, median signal intensities, and z-scores for the gapped 8-mers with enrichment scores above a 0.25 threshold.


Download

PWMs

The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.


Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download

Motif Logos

The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.


Download

60-mer Probe Sequences

Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)


Download

Nakagawa et al., PNAS 2013

All Data

This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.


Download

All Ungapped 8-mer Data

The enrichment scores associated with each contiguous 8-mer for each factor.


Separate files for each factor: Download

Top Gapped 8-mer Data

Enrichment scores, median signal intensities, and z-scores for the gapped 8-mers with enrichment scores above a 0.25 threshold.


Download

PWMs

The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.


Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download

Motif Logos

The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.


Download

60-mer Probe Sequences

Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)


Download

Busser et al., Development 2012

All Data

This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.


Download

All Ungapped 8-mer Data

The enrichment scores associated with each contiguous 8-mer for each factor.


Separate files for each factor: Download

Top Gapped 8-mer Data

Enrichment scores, median signal intensities, and z-scores for the gapped 8-mers with enrichment scores above a 0.25 threshold.


Download

PWMs

The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.


Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download

Motif Logos

The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.


Download

60-mer Probe Sequences

Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)


Download

Cheatle Jarvela et al., Mol Biol Evol 2014

All Data

This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.


Download

All Ungapped 8-mer Data

The enrichment scores associated with each contiguous 8-mer for each factor.


Separate files for each factor: Download

Top Gapped 8-mer Data

Enrichment scores, median signal intensities, and z-scores for the gapped 8-mers with enrichment scores above a 0.25 threshold.


Download

PWMs

The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.


Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download

Motif Logos

The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.


Download

60-mer Probe Sequences

Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)


Download

Del Bianco et al., PLoS ONE 2010

All Data

This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.


Download

All Ungapped 8-mer Data

The enrichment scores associated with each contiguous 8-mer for each factor.


Separate files for each factor: Download

Top Gapped 8-mer Data

Enrichment scores, median signal intensities, and z-scores for the gapped 8-mers with enrichment scores above a 0.25 threshold.


Download

PWMs

The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.


Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download

Motif Logos

The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.


Download

60-mer Probe Sequences

Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)


Download

Gordan et al., Gen. Bio. 2011

All Data

This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.


Download

All Ungapped 8-mer Data

The enrichment scores associated with each contiguous 8-mer for each factor.


Separate files for each factor: Download

Top Gapped 8-mer Data

Enrichment scores, median signal intensities, and z-scores for the gapped 8-mers with enrichment scores above a 0.25 threshold.


Download

PWMs

The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.


Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download

Motif Logos

The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.


Download

60-mer Probe Sequences

Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)


Download

Campbell et al., PLoS Pathog 2010

All Data

This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.


Download

All Ungapped 8-mer Data

The enrichment scores associated with each contiguous 8-mer for each factor.


Separate files for each factor: Download

Top Gapped 8-mer Data

Enrichment scores, median signal intensities, and z-scores for the gapped 8-mers with enrichment scores above a 0.25 threshold.


Download

PWMs

The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.


Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download

Motif Logos

The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.


Download

60-mer Probe Sequences

Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)


Download

Alibes et al., NAR 2010

All Data

This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.


Download

All Ungapped 8-mer Data

The enrichment scores associated with each contiguous 8-mer for each factor.


Separate files for each factor: Download

PWMs

The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.


Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download

Motif Logos

The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.


Download

60-mer Probe Sequences

Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)


Download

Wei et al., EMBO J 2010

All Data

This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.


Download

All Ungapped 8-mer Data

The enrichment scores associated with each contiguous 8-mer for each factor.


Separate files for each factor: Download

Top Gapped 8-mer Data

Enrichment scores, median signal intensities, and z-scores for the gapped 8-mers with enrichment scores above a 0.25 threshold.


Download

PWMs

The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.


Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download

Motif Logos

The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.


Download

60-mer Probe Sequences

Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)


Download

Lesch et al., Genes Dev 2009

All Data

This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.


Download

All Ungapped 8-mer Data

The enrichment scores associated with each contiguous 8-mer for each factor.


Separate files for each factor: Download

PWMs

The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.


Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download

Motif Logos

The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.


Download

60-mer Probe Sequences

Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)


Download

Scharer et al., Cancer Res 2009

All Data

This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.


Download

All Ungapped 8-mer Data

The enrichment scores associated with each contiguous 8-mer for each factor.


Separate files for each factor: Download

PWMs

The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.


Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download

Motif Logos

The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.


Download

60-mer Probe Sequences

Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)


Download

Berger et al., Nat Biotech 2006

All Data

This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.


Download

All Ungapped 8-mer Data

The enrichment scores associated with each contiguous 8-mer for each factor.


Separate files for each factor: Download

PWMs

The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.


Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download

Motif Logos

The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.


Download

60-mer Probe Sequences

Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)


Download

Berger et al., Nat Biotech 2006

All Data

This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.


Download

All Ungapped 8-mer Data

The enrichment scores associated with each contiguous 8-mer for each factor.


Separate files for each factor: Download

PWMs

The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.


Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download

Motif Logos

The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.


Download

60-mer Probe Sequences

Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)


Download

Berger et al., Nat Biotech 2006

All Data

This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.


Download

All Ungapped 8-mer Data

The enrichment scores associated with each contiguous 8-mer for each factor.


Separate files for each factor: Download

PWMs

The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.


Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download

Motif Logos

The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.


Download

60-mer Probe Sequences

Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)


Download

Berger et al., Nat Biotech 2006

All Data

This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.


Download

All Ungapped 8-mer Data

The enrichment scores associated with each contiguous 8-mer for each factor.


Separate files for each factor: Download

PWMs

The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.


Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download

Motif Logos

The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.


Download

60-mer Probe Sequences

Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)


Download

De Silva et al., PNAS 2008

All Data

This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.


Download

All Ungapped 8-mer Data

The enrichment scores associated with each contiguous 8-mer for each factor.


Separate files for each factor: Download

PWMs

The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.


Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download

Motif Logos

The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.


Download

60-mer Probe Sequences

Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)


Download

De Silva et al., PNAS 2008

All Data

This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.


Download

All Ungapped 8-mer Data

The enrichment scores associated with each contiguous 8-mer for each factor.


Separate files for each factor: Download

PWMs

The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.


Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download

Motif Logos

The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.


Download

60-mer Probe Sequences

Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)


Download

Pompeani et al., Mol Microbiol 2008

All Data

This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.


Download

All Ungapped 8-mer Data

The enrichment scores associated with each contiguous 8-mer for each factor.


Separate files for each factor: Download

PWMs

The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.


Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download

Motif Logos

The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.


Download

60-mer Probe Sequences

Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)


Download

Grove et al., Cell 2009

All Data

This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.


Download

All Ungapped 8-mer Data

The enrichment scores associated with each contiguous 8-mer for each factor.


Separate files for each factor: Download

PWMs

The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.


Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download

Motif Logos

The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.


Download

60-mer Probe Sequences

Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)


Download

Badis et al., Science 2009

All Data

This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.


Download

All Ungapped 8-mer Data

The enrichment scores associated with each contiguous 8-mer for each factor.


Separate files for each factor: Download

PWMs

The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.


Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download

Motif Logos

The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.


Download

60-mer Probe Sequences

Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)


Download

Zhu et al., Genome Res 2009

All Data

This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.


Download

All Ungapped 8-mer Data

The enrichment scores associated with each contiguous 8-mer for each factor.


Separate files for each factor: Download

Top Gapped 8-mer Data

Enrichment scores, median signal intensities, and z-scores for the gapped 8-mers with enrichment scores above a 0.25 threshold.


Download

PWMs

The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.


Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download

Motif Logos

The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.


Download

60-mer Probe Sequences

Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)


Download

Berger et al., Cell 2008

All Data

This download includes all experimental data and computational analyses from the compilation of PBM results that are available on UniPROBE.


Download

All Ungapped 8-mer Data

The enrichment scores associated with each contiguous 8-mer for each factor.


Separate files for each factor: Download

PWMs

The position weight matrices (PWMs) for each experiment. These matrices hold frequency values.


Separate files for each factor. Files ending in _RC.pwm contain the reverse complement of the forward PWM: Download

Motif Logos

The motif logos derived from the corresponding position weight matrices. Files ending in _RC.png show the logo for the reverse complement of the forward motif.


Download

60-mer Probe Sequences

Holds separate text files for each Mtf2_C factor, where a given file contains the normalized signal intensities and nucleotide sequences of PBM probes (designed from our 'all 10-mer' de Bruijn sequences)


Download

SQL Data: (Download)

Note: if you want to make use of the database SQL dump, you may need our functions to map k-mers uniquely to and from integers, which is the form in which they are stored in the database. This file will provide you with the algorithm in the form of two different language implementations. Here is a UML diagram illustrating the relationships between the various tables in the database.

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