-Genomic Data Links
Protein
Alx3
UniPROBE Accession Number
UP00108
Species
Mus musculus
Domain
Homeobox
Uniprot
O70137
Name and Synonyms
aristaless 3
Homeobox protein aristaless-like 3, Proline-rich transcription factor ALX3
IHOP
119424
Description
None Available
RefSeq
NP_031467
Alx3 DNA binding domain
1   RRNRTTFSTF QLEELEKVFQ KTHYPDVYAR EQLALRTDLT EARVQVWFQN
51  RRAKWRK
JASPAR
None Available
-PBM Motif Data for Alx3
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
CTAATTAG (E.S. 0.49925)
CTAATTAG (E.S. 0.49925)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NTAATNNNNN
NNNNNATTAN
Downloads
Download the zip of all Alx3 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Alx3 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=108&sourceDB=uniprobe
-Alx3 Datasets
Clone ID Expression Expression Method Save View
pTH3418 #1 IVT save search
Clone pTH3418 insert sequence
1   PGLPDSMELA KTKSKKRRNR TTFSTFQLEE LEKVFQKTHY PDVYAREQLA
51  LRTDLTEARV QVWFQNRRAK WRKRERYGKM QEGRNPFTTA YDI
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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