-Genomic Data Links
Protein
Lhx2
UniPROBE Accession Number
UP00115
Species
Mus musculus
Domain
Homeobox
Uniprot
Q9Z0S2
Name and Synonyms
LIM homeobox protein 2
ap, apterous, Lh-2, LH2A, LIM/homeobox protein Lhx2, Lim2
IHOP
122519
Description
None Available
RefSeq
NP_034840
Lhx2 DNA binding domain
1   KRMRTSFKHH QLRTMKSYFA INHNPDAKDL KQLAQKTGLT KRVLQVWFQN
51  ARAKFRR
JASPAR
None Available
-PBM Motif Data for Lhx2
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
CTAATTAG (E.S. 0.49919)
CTAATTAG (E.S. 0.49919)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNYMATTAN
NTAATKRNNN
Downloads
Download the zip of all Lhx2 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Lhx2 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=115&sourceDB=uniprobe
-Lhx2 Datasets
Clone ID Expression Expression Method Save View
pTH953 #1 E. coli save search
Clone pTH953 insert sequence
1   AEHLDRDQPY PSSQKTKRMR TSFKHHQLRT MKSYFAINHN PDAKDLKQLA
51  QKTGLTKRVL QVWFQNARAK FRRNLLRQEN TGVDKTSDAT LQT
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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