-Genomic Data Links
Protein
Hoxd11
UniPROBE Accession Number
UP00117
Species
Mus musculus
Domain
Homeobox
Uniprot
P23813
Name and Synonyms
homeo box D11
Homeobox protein Hox-D11, Hox-4.6, Hox-5.4, Hox-5.5, Hoxd-11
IHOP
121753
Description
None Available
RefSeq
NP_032299
Hoxd11 DNA binding domain
1   RKKRCPYTKY QIRELEREFF FNVYINKEKR LQLSRMLNLT DRQVKIWFQN
51  RRMKEKK
JASPAR
None Available
-PBM Motif Data for Hoxd11
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
GTCGTAAA (E.S. 0.49721)
TTTACGAC (E.S. 0.49721)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNHDYNNNN
NNNNRHDNNN
Downloads
Download the zip of all Hoxd11 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Hoxd11 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=117&sourceDB=uniprobe
-Hoxd11 Datasets
Clone ID Expression Expression Method Save View
pTH3873 #1 IVT save search
Clone pTH3873 insert sequence
1   EAGAEKSGGT VAPQRSRKKR CPYTKYQIRE LEREFFFNVY INKEKRLQLS
51  RMLNLTDRQV KIWFQNRRMK EKKLNRDRLQ YFTGNPLF
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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