-Genomic Data Links
Protein
Nkx2-9
UniPROBE Accession Number
UP00119
Species
Mus musculus
Domain
Homeobox
Uniprot
O70584
Name and Synonyms
NK2 transcription factor related, locus 9 (Drosophila)
Homeobox protein NK-2 homolog H, Homeobox protein Nkx-2.8, Homeobox protein Nkx-2.9, Nkx2.9, Nkx-2.9, Nkx2-8, Nkx2h, tinman
IHOP
123147
Description
None Available
RefSeq
NP_032727
Nkx2-9 DNA binding domain
1   RKRRVLFSKA QTLELERRFR QQRYLSAPER EQLARLLRLT PTQVKIWFQN
51  HRYKLKR
JASPAR
None Available
-PBM Motif Data for Nkx2-9
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
AAGTACTT (E.S. 0.49669)
AAGTACTT (E.S. 0.49669)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNVYHCTYNN
NNRAGDRBNN
Downloads
Download the zip of all Nkx2-9 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Nkx2-9 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=119&sourceDB=uniprobe
-Nkx2-9 Datasets
Clone ID Expression Expression Method Save View
pTH3082 #1 IVT save search
Clone pTH3082 insert sequence
1   LASLRRASPG SDPEKRRKRR VLFSKAQTLE LERRFRQQRY LSAPEREQLA
51  RLLRLTPTQV KIWFQNHRYK LKRGRAPGIT EPSDMAASSD LHA
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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