-Genomic Data Links
Protein
Ipf1
UniPROBE Accession Number
UP00124
Species
Mus musculus
Domain
Homeobox
Uniprot
P52946
Name and Synonyms
insulin promoter factor 1, homeodomain transcription factor
IDX-1, Insulin promoter factor 1, IPF-1, Islet/duodenum homeobox 1, Mody4, Pancreas/duodenum homeobox 1, Pdx1, pdx-1, Somatostatin-transactivating factor 1, STF-1
IHOP
123472
Description
None Available
RefSeq
NP_032840
Ipf1 DNA binding domain
1   KRTRTAYTRA QLLELEKEFL FNKYISRPRR VELAVMLNLT ERHIKIWFQN
51  RRMKWKK
JASPAR
None Available
-PBM Motif Data for Ipf1
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
G.TAATTA.C (E.S. 0.49766)
G.TAATTA.C (E.S. 0.49766)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNWRATNNNN
NNNNATYWNN
Downloads
Download the zip of all Ipf1 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Ipf1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=124&sourceDB=uniprobe
-Ipf1 Datasets
Clone ID Expression Expression Method Save View
pTH3815 #1 IVT save search
Clone pTH3815 insert sequence
1   KGQWAGGAYT AEPEENKRTR TAYTRAQLLE LEKEFLFNKY ISRPRRVELA
51  VMLNLTERHI KIWFQNRRMK WKKEEDKKRS SGTPSGGGGG EEP
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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