-Genomic Data Links
Protein
Gbx2
UniPROBE Accession Number
UP00131
Species
Mus musculus
Domain
Homeobox
Uniprot
P48031
Name and Synonyms
gastrulation brain homeobox 2
D130058E05Rik, Gastrulation and brain-specific homeobox protein 2, Gbx-2, Homeobox protein GBX-2, Homeobox protein STRA7, Mmoxa, MMoxA, Stra7
IHOP
121203
Description
None Available
RefSeq
NP_034392
Gbx2 DNA binding domain
1   RRRRTAFTSE QLLELEKEFH CKKYLSLTER SQIAHALKLS EVQVKIWFQN
51  RRAKWKR
JASPAR
None Available
-PBM Motif Data for Gbx2
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
CTAATTAG (E.S. 0.49898)
CTAATTAG (E.S. 0.49898)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNWNWWNNNN
NNNNWWNWNN
Downloads
Download the zip of all Gbx2 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Gbx2 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=131&sourceDB=uniprobe
-Gbx2 Datasets
Clone ID Expression Expression Method Save View
pTH3110 #1 IVT save search
Clone pTH3110 insert sequence
1   PQSGGAAGST TSTGKNRRRR TAFTSEQLLE LEKEFHCKKY LSLTERSQIA
51  HALKLSEVQV KIWFQNRRAK WKRVKAGNAN SKTGEPSRNP KIV
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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