-Genomic Data Links
Protein
Cdx2
UniPROBE Accession Number
UP00133
Species
Mus musculus
Domain
Homeobox
Uniprot
P43241
Name and Synonyms
caudal type homeo box 2
Caudal-type homeobox protein 2, Cdx-2, Homeobox protein CDX-2
IHOP
120011
Description
None Available
RefSeq
NP_031699
Cdx2 DNA binding domain
1   DKYRVVYTDH QRLELEKEFH FSRYITIRRK SELAATLGLS ERQVKIWFQN
51  RRAKERK
JASPAR
None Available
-PBM Motif Data for Cdx2
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
GTAATAAA (E.S. 0.49623)
TTTATTAC (E.S. 0.49623)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNWWAYDRNN
NNYHRTWWNN
Downloads
Download the zip of all Cdx2 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Cdx2 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=133&sourceDB=uniprobe
-Cdx2 Datasets
Clone ID Expression Expression Method Save View
pTH4272 #1 E. coli save search
Clone pTH4272 insert sequence
1   KPAQQSLGSQ VKTRTKDKYR VVYTDHQRLE LEKEFHFSRY ITIRRKSELA
51  ATLGLSERQV KIWFQNRRAK ERKIKKKQQQ QQQQQQQQPP QPP
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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