-Genomic Data Links
Protein
Hoxb13
UniPROBE Accession Number
UP00134
Species
Mus musculus
Domain
Homeobox
Uniprot
P70321
Name and Synonyms
homeo box B13
Homeobox protein Hox-B13
IHOP
121736
Description
None Available
RefSeq
NP_032293
Hoxb13 DNA binding domain
1   RKKRIPYSKG QLRELEREYA ANKFITKDKR RKISAATSLS ERQITIWFQN
51  RRVKEKK
JASPAR
None Available
-PBM Motif Data for Hoxb13
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
CC.ATAAAA (E.S. 0.49676)
TTTTAT.GG (E.S. 0.49676)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNHHRTWAAN
NTTWAYDDNN
Downloads
Download the zip of all Hoxb13 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Hoxb13 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=134&sourceDB=uniprobe
-Hoxb13 Datasets
Clone ID Expression Expression Method Save View
pTH3479 #1 E. coli save search
Clone pTH3479 insert sequence
1   PSVQHPPPDG CAFRRGRKKR IPYSKGQLRE LEREYAANKF ITKDKRRKIS
51  AATSLSERQI TIWFQNRRVK EKKVLAKVKT STTP
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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