-Genomic Data Links
Protein
Hoxb4
UniPROBE Accession Number
UP00144
Species
Mus musculus
Domain
Homeobox
Uniprot
P10284
Name and Synonyms
homeo box B4
Homeobox protein Hox-B4, Hox-2.6, Hoxb-4
IHOP
121738
Description
None Available
RefSeq
NP_034589
Hoxb4 DNA binding domain
1   KRSRTAYTRQ QVLELEKEFH YNRYLTRRRR VEIAHALCLS ERQIKIWFQN
51  RRMKWKK
JASPAR
None Available
-PBM Motif Data for Hoxb4
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
TTAATTAA (E.S. 0.49766)
TTAATTAA (E.S. 0.49766)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NTAATNDNNN
NNNHNATTAN
Downloads
Download the zip of all Hoxb4 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Hoxb4 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=144&sourceDB=uniprobe
-Hoxb4 Datasets
Clone ID Expression Expression Method Save View
pTH2627 #1 E. coli save search
Clone pTH2627 insert sequence
1   KVHVSTVNPN YAGGEPKRSR TAYTRQQVLE LEKEFHYNRY LTRRRRVEIA
51  HALCLSERQI KIWFQNRRMK WKKDHKLPNT KIRSGGTAGA AGG
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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